Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq379 122 1e-22 >seq379 Length=3625 Score = 122 bits (134), Expect = 1e-22 Identities = 188/266 (71%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 ||||| |||| |||| ||||| | || | | |||| |||||| | ||||||| Sbjct 2318 GGTGAAATGGGAGTTGATATTGCAATTGGATCTGTATAAAGATTTGGTGTACCTATGGCC 2259 Query 158467 TACGGAGGTCCTCATGCTGCAT-TCT---TTGCAACAACAGACAAGTATAAGAGAAAGAT 158522 || || ||||| ||| | | | | | |||||| ||| | | ||||||||||| Sbjct 2258 TATGGTGGTCCCCATCCAGGTTATATGGCTTGCAA----AGATGAATTCAAGAGAAAGAT 2203 Query 158523 ACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGC 158582 || || | || | ||| ||| | ||| | ||||| | ||||| |||||| | || Sbjct 2202 GCCAGGTCGTCTTATCGGTGTTTCAATTGATGCCCAAGGTGACAAAGCTTACAGAATGGC 2143 Query 158583 ACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGC 158642 || || || ||||| |||||||||||||||||||| |||||| ||||| ||||| || Sbjct 2142 TCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAACATTTGCACTGC 2083 Query 158643 ACAAGCACTGCTGGCTAATATGTCTG 158668 ||||| || || ||||| || |||| Sbjct 2082 TCAAGCCCTTCTTGCTAACATTTCTG 2057 Score = 105 bits (116), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 157890 AGGATACTATGGAACCATCACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 157947 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 2835 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 2778 Query 157948 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 158007 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 2777 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 2718 Query 158008 TTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAAACGCAT 158065 |||| || | | |||| | | || || | || ||| ||| | |||| || | Sbjct 2717 CTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACT--CGACGTCTCAAATGCTT 2660 Query 158066 CTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAA 158117 |||| || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 2659 CTCTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 2608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 160042 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 160101 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 575 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 516 Query 160102 TTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGA-TGAGTTGCAAAGATT 160160 |||| | | ||| | || ||||| |||||||| || || |||| || | ||||| Sbjct 515 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA-AGACAAGATTGAGATGGACAGATT 457 Query 160161 TGTTGATGCTATGGATAAAATAAAAAGAGAGAT 160193 | ||||| ||| | | ||| | | |||||| Sbjct 456 CATCGATGCCATGAAGAGAATTAGAGAAGAGAT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587886817637680