Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq21020 170 4e-37 seq22269 167 5e-36 seq2750 165 2e-35 seq5463 154 3e-32 seq18786 152 1e-31 seq14578 104 5e-17 >seq21020 Length=1175 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| | |||||| || || ||||||||||||||||| || | ||| || Sbjct 668 TCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGT 609 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || ||||||||||||| ||||| || || || || || Sbjct 608 TCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACC 549 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || ||| ||| ||||| ||||| ||||| || || || ||||| Sbjct 548 TTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCGACGTCAAG 489 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 488 GGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | |||||| || ||||| || || || ||||| |||| || || Sbjct 440 TCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 381 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||| || || ||||| || |||| ||||| || || || || || Sbjct 380 TCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCC 321 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || || |||||| || |||||||| || || || || ||||| Sbjct 320 CTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACATCAAG 261 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 || | ||||| || || | ||| || ||||| | || ||||| | ||| Sbjct 260 AGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATTTTTTGTT 211 >seq22269 Length=1399 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | |||||||| || ||||| || || ||||| || | |||||| Sbjct 872 TCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGT 813 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || |||||||| |||| |||||| || || || || || Sbjct 812 TCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACC 753 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || ||| |||||| ||||||||||| || ||| || || || | Sbjct 752 TTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAA 693 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 692 GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| |||| |||| | Sbjct 1100 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 1042 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| ||||||||||||| |||||| || || || || | Sbjct 1041 TTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATAC 982 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| | || || ||| ||||| ||||||||||| || || || || | Sbjct 981 CTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA 922 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | |||||||| || | || || ||||| | |||||| Sbjct 921 GGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 879 >seq2750 Length=4552 Score = 165 bits (182), Expect = 2e-35 Identities = 173/225 (77%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| |||||||| || | ||| ||||| || |||||||| || |||||||| | |||| | Sbjct 4196 TCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-G 4254 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | || ||| || || ||||| |||| ||||| || || ||||| | Sbjct 4255 TTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATAC 4314 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||||||||||||| || ||| ||||| || ||||| || ||| || || |||| Sbjct 4315 CTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAA 4374 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | |||| ||||| || |||||||| || ||||| | | ||||| Sbjct 4375 GAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 4419 >seq5463 Length=1496 Score = 154 bits (170), Expect = 3e-32 Identities = 169/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | |||||||| || ||||| || || | ||| || | |||||| Sbjct 1089 TCTGAGTCTGAGGACCAAATGAAGAGTAGA-TCTTTCTGGATGT-GTAGTCTGAAAGAGT 1032 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || |||||||| |||| |||||| || || || || || Sbjct 1031 TCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACC 972 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || ||| |||||| ||||||||||| || ||| || || || | Sbjct 971 TTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAA 912 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 911 GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 870 Score = 149 bits (164), Expect = 1e-30 Identities = 169/223 (76%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| |||| |||| | Sbjct 1316 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 1258 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| ||||||||||||| |||||| || || || || | Sbjct 1257 TTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATAC 1198 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| | || || ||| ||||| ||||||||||| || || || || | Sbjct 1197 CTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA 1138 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | |||||||| || | || || ||||| | |||||| Sbjct 1137 GGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGA-TTGCAT 1096 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | |||||| || ||||| ||||| || ||||| || ||| || Sbjct 863 TCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGT 804 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || || || || |||| |||||| || || || || || Sbjct 803 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACC 744 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || ||| |||||| ||||||||||| || ||| || || || | Sbjct 743 TTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAA 684 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 683 GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 642 >seq18786 Length=1170 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| |||| |||| | Sbjct 300 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 358 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| ||||||||||||| |||||| || || || || | Sbjct 359 TTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATAC 418 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| | || || ||| ||||| ||||||||||| || || || || | Sbjct 419 CTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA 478 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | |||||||| || | || || ||||| | |||||| Sbjct 479 GGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 521 >seq14578 Length=3221 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | || || || |||||| ||| ||||||||| || | | || Sbjct 705 TCTGAGTCTAAGAACTAAATGGAGTGTTGACTCTGTTTAAATATTGTAGTCTCCCAATGT 764 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || || | | | ||||||| || || | || ||||||||| ||||||||||| Sbjct 765 CCTTCCGTCCTCTAATTACATACCTGCAAATATTAATCTTTGTTGGTCAGGAGGAATGCC 824 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| |||| |||||| |||| | | |||||||| || Sbjct 825 CTCTTTATCTTAAATTTTAAGCTTAAATTCTTCAATGGTCTC 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109163704744421