Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq18508 203 4e-47 seq5401 203 4e-47 seq2801 113 5e-20 >seq18508 Length=3287 Score = 203 bits (224), Expect = 4e-47 Identities = 724/1116 (65%), Gaps = 32/1116 (3%) Strand=Plus/Plus Query 47702 ATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| ||||||| |||||||| ||||||||||| || | ||| ||| ||| Sbjct 1340 ATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTAGC 1399 Query 47762 TTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNN 47821 ||| || | ||||| | || |||||||||||||||||||| Sbjct 1400 TTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCTCTT 1459 Query 47822 NACAATTTCTCTTAATTTATTAAAATCAAA--CTT--GTTATTTATAACA--AACCTATT 47875 | | ||| || | | ||||| | ||| ||| | ||||| || ||||| Sbjct 1460 GGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCTATT 1519 Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 | || ||||| ||||||||||| ||||| || |||| |||| | ||| ||| | || Sbjct 1520 TAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGACGAT 1579 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG 47993 |||| || || ||| || || || || || | ||||| | || ||| | Sbjct 1580 CTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTC--TA 1637 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 || || || || |||||||||||| |||| || ||||| || | ||||| || ||||| Sbjct 1638 TTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATT 1697 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTAT-TATCA-TG--TTCGTA 48109 | ||| | |||||||| ||||| ||| || | || || || ||| || Sbjct 1698 TAACCCCAGAGCCATCTAGCCTT---AACAG-TCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 | | || | |||||||| || || || | | || | || || |||||||| Sbjct 1754 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 1813 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||| | | |||||| |||| || ||||| |||| || | |||||| | Sbjct 1814 TGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGT 1873 Query 48230 CCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||||||||| || ||| | || |||| ||| ||||| || || |||| || | | Sbjct 1874 CCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGA 1932 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 ||| ||| ||||| |||||||| ||||||||||| | ||| | || | | || Sbjct 1933 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 1992 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 || ||| ||| |||| ||| | ||||| || || | || |||| ||||||||| Sbjct 1993 TTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTG 2052 Query 48409 GGA-CAATACCATTTG-ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466 | | |||| ||||||| |||| || || || || || || || |||||||| Sbjct 2053 GAATCAAT-CCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTAC 2110 Query 48467 ATTACTAATTGAAATACCTATACCACCTGC--CATTTTAGATATTAGAGCACACCGTTTA 48524 || | ||| | || |||||||| || | ||| ||||| | |||| ||| Sbjct 2111 ATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATA--ATAGCAATTTATTTT 2168 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 | || ||| |||| || || || || ||| | | | ||| | || ||| | | Sbjct 2169 AAAGTTTCAAAAATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTC 2228 Query 48585 ATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC--CATT 48642 || | || | ||||| || ||||| | ||||||| |||||| ||||| || | Sbjct 2229 ATCTAAGGTTTTGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGT 2288 Query 48643 TCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTA 48702 | || || ||| | || || || | | || || | || || ||| ||||| | Sbjct 2289 TGACTCAT--CAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAA 2346 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAA 48762 || ||| | ||| | ||| | || ||||| |||| |||| ||| ||| | || Sbjct 2347 TACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATCTTTAAGAA 2406 Query 48763 GATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 | || | | ||||||||||| | ||||||||||||| Sbjct 2407 GGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 2442 >seq5401 Length=3445 Score = 203 bits (224), Expect = 4e-47 Identities = 402/595 (68%), Gaps = 0/595 (0%) Strand=Plus/Plus Query 48204 ACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGT 48263 ||||| |||| |||| |||||| ||||| ||||| | ||| || || || | |||| || Sbjct 1763 ACTCTCTTCATGAATAGATCTGGAATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGT 1822 Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 || || || || |||| || | |||| ||| || || | | ||| || ||||||||| Sbjct 1823 TCCTCTTTACCGTGATTCTTTCTTAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGT 1882 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || || || || || | | ||| || || ||||||||| || | |||||| ||| Sbjct 1883 TCCAAGTAAATAGCGAATGAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCA 1942 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || | || | ||||| | ||| || || | |||||| |||||| || ||| Sbjct 1943 GTCTCATTGAAGACTCTGAGCATGGGTACGAGACCATTACTGTGACCATTAGTGCCCTTG 2002 Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503 || ||||| ||| | ||||| || || || | | ||| | |||||| || ||| Sbjct 2003 ATGTAACTGCCAGTGGCTCTGATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTT 2062 Query 48504 GATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 || || | || |||||||||||||| || || | || || || |||| Sbjct 2063 GAAATCAAGGCGATGTTCTTAAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATC 2122 Query 48564 TTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGA 48623 | | || || ||||| ||||||| || | | ||| |||| ||| || || || ||| Sbjct 2123 ATAAGGAGGAAGCAACTTGACATTTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGA 2182 Query 48624 GATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 | |||||| | |||||| | || | | || || |||||||| | ||||| ||| Sbjct 2183 GTGGCATGAGTGAACCATCTGTCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATA 2242 Query 48684 TCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATT 48743 ||| || || ||||||| ||| || | ||| ||||| | ||| ||||| ||||| || Sbjct 2243 TCCTTTTTGTGGATACCTACAGACACTCTCATCAACATGTGTTGTGGTCTCTCAACGATC 2302 Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 || ||| | || | | || ||| | ||||| || || ||||| ||||||| Sbjct 2303 TTTGAATTGACCTTTAGTAAGTAGGATCTCTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq2801 Length=1577 Score = 113 bits (124), Expect = 5e-20 Identities = 404/621 (65%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || | || |||||||| || | ||||| || || || | | Sbjct 609 CAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 668 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||||| || || | || || | |||||| || || ||| || ||||| || ||||| Sbjct 669 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAA 727 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || | || || ||||||| |||||| || | | ||||| | | | Sbjct 728 GATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGC---TCTCACC 784 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| || | ||||| ||||||||||| ||||| ||| || | || | || Sbjct 785 AATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTT 844 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA--ACTG--T 19255 || || || ||| | || || || ||| | || || | |||| | Sbjct 845 GAAGAGGAACTCCTTCTCGTGTGGGTC----ACTGATGAGGGTGTCGATGAGTACTGAGT 900 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 | | ||||| ||||| || || || ||| || || || || ||||| | |||||||| Sbjct 901 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 960 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || | |||| |||| ||||| | | | | || || || || ||||| || | Sbjct 961 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 1020 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTC 19434 | || ||||| || | || || || ||||| ||| | || | || ||| | | | | | Sbjct 1021 CAGCGAAAAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCC 1079 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC-TCTGC 19493 ||||| |||| || | | | || | ||| ||| ||||| |||| |||| |||| Sbjct 1080 CAATCCTTAACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGG 1139 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTT 19553 | || ||||| ||||| || || || | || |||| ||||||||||| ||| Sbjct 1140 TCCTTG-TACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGG 1198 Query 19554 ATTTTCTTTAAGAATAGGTTC 19574 || |||| |||| ||| || Sbjct 1199 GTTATCTTCGAGAAGAGGCTC 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561951669511320