Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq7876 91.5 9e-14 >seq7876 Length=4354 Score = 91.5 bits (100), Expect = 9e-14 Identities = 174/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| || || | |||||| ||||| | | |||||||| |||||| | || ||| Sbjct 1543 ATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCTTCAATCC 1484 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 ||||| || |||| || || | |||| || |||||||| || ||||| || Sbjct 1483 GCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACC 1424 Query 78485 TAAGA---ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 |||| ||| |||| || ||| |||| |||||| |||||||||||| | || Sbjct 1423 -AAGACCCATA--TCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGA 1367 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAG-TCAGCAG 78600 || ||||| | || | |||| || || || || ||||| | | |||| ||||||| Sbjct 1366 AACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGT-TTTTAAGATCAGCAG 1308 Query 78601 GATTCCAAGCA 78611 ||||||||| Sbjct 1307 CGTTCCAAGCA 1297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300078191673400