Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq21020 95.1 1e-14 seq2750 93.3 4e-14 seq22269 86.0 5e-12 >seq21020 Length=1175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || || ||||| ||| || || || ||| Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 506 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| ||| || ||||| || | || |||||| Sbjct 507 GACACTATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 566 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| ||| | |||||| | ||| | | || || || Sbjct 567 CAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 626 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||||| || ||| |||| | ||||| ||||||| || Sbjct 627 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGGTAT 676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||| |||| || || || || | || || || ||||| || || || || Sbjct 215 AAAAATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCC 274 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | || ||||| || ||| |||||||||||| | || || Sbjct 275 ATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGA 334 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||||||||| || || || || ||||| |||||||| | ||| | |||| || Sbjct 335 TCAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTA 394 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || || || || ||| |||| || ||| | ||||||| || Sbjct 395 CAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGGTAT 448 >seq2750 Length=4552 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 4324 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 4265 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 4264 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTTG 4205 Query 28767 AGATTACGAGGAGG 28780 ||| | |||| || Sbjct 4204 AGACTTAGAGGTGG 4191 >seq22269 Length=1399 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || || ||||| ||| || || |||||| Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||| ||| ||||| || || | || |||||| Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| ||||| || || || ||| | |||||| | |||| | | || || ||| Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||||||||| || |||| | ||| | |||| || || Sbjct 831 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGGTAT 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425288856320577