Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq18508 203 2e-47 seq5401 156 2e-33 >seq18508 Length=3287 Score = 203 bits (224), Expect = 2e-47 Identities = 209/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTG 25946 ||||||||| | | | |||||| ||||| |||||| ||||| || || | ||||| Sbjct 1811 ATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTC-ATGAAAAGATCTG 1869 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 || |||| | || || || | ||||| ||||| | ||||| || |||||||||||| Sbjct 1870 GAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1929 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || | | ||| || | ||||| | |||||||||||| | ||||| ||| ||| | Sbjct 1930 TGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1989 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | ||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |||| Sbjct 1990 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 2049 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 |||||| |||||| ||||| |||||||||| Sbjct 2050 TTGGAATCAATCCATTTGAATATCCGTTTGT 2080 >seq5401 Length=3445 Score = 156 bits (172), Expect = 2e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| ||| ||| |||| |||||||||||| | || |||| || ||||| ||||| | Sbjct 1763 ACTCTCTTCATGAATAGATCTGGAATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGT 1822 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 || ||||| |||||||||||| |||| | | |||||| || | ||||| |||||||||| Sbjct 1823 TCCTCTTTACCGTGATTCTTTCTTAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGT 1882 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || || || ||||| || ||| ||||| || || || ||||| || || ||||| ||| Sbjct 1883 TCCAAGTAAATAGCGAATGAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCA 1942 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAAC 26133 || |||||||| ||| | | ||| || || Sbjct 1943 GTCTCATTGAAGACTCTGAGCATGGGTAC 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252971034185225