Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq379 104 3e-17 >seq379 Length=3625 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139845 TTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTT 139904 |||||||| | | ||| | ||| || |||| ||| || ||||| || ||||| || ||| Sbjct 2608 TTATATGCCATAAACATAGTCTCAGCAGCTGAAGTAGCCTCATCCAAGAGAGAAGCATTT 2667 Query 139905 GCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAAT 139964 | | | | || | || || | | |||| | | || |||| | ||| | | Sbjct 2668 GAGACGTCGAGTTTGGTTAACTCAGTCACCATAGTTTAGAAGTTTAATAGGGATTCTAGT 2727 Query 139965 CTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCA 140024 || || |||| ||||||||||||||||| ||||||| ||||||||| | ||||| ||| Sbjct 2728 CTACCTTGAGCGATCTCAGCTTGATAGGGGGTGTAAGGTGTGTACCAGTTTGGATTTTCA 2787 Query 140025 AGAACGTTTC-GCTG-TATGACTGGGGGTGTAATGGTTCCATAGTATCCT 140072 ||||| || | ||| || ||||||||||| | ||| |||||| ||| Sbjct 2788 AGAACATTCCTTCTGATAACACTGGGGGTGT--TAGTTGGATAGTAACCT 2835 Score = 100 bits (110), Expect = 3e-16 Identities = 183/266 (69%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| || || || || || ||||| || ||||| ||||| |||||| |||||||||| Sbjct 2057 CAGAAATGTTAGCAAGAAGGGCTTGAGCAGTGCAAATGTTTGAGGTTGCCTTGTCTCTTC 2116 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCA 139413 | |||||||| ||||| ||||| || || | |||||| || | |||| | || | Sbjct 2117 TGATATGCTGTTCTCTGGTTTGGAGAGCCATTCTGTAAGCTTTGTCACCTTGGGCATCAA 2176 Query 139414 CTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAA--- 139470 ||| ||| | || | || || ||||||||||| | | ||| |||||| Sbjct 2177 TTGAAACACCGATAAGACGACCTGGCATCTTTCTCTTGAATTCATCT----TTGCAAGCC 2232 Query 139471 AGA-ATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCT 139529 | | | | | ||| ||||| || || ||||||| | |||||| |||| | | || Sbjct 2233 ATATAACCTGGATGGGGACCACCATAGGCCATAGGTACACCAAATCTTTATACAGATCCA 2292 Query 139530 ACAGCAATATCAAATCCCCACTCACC 139555 | |||||||||| |||| ||||| Sbjct 2293 ATTGCAATATCAACTCCCATTTCACC 2318 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 137769 ATCTCTCTTTTTATTTTATCCATAGCATCTACAAATCTTTGCAACTCA-TCGAGTGACTC 137827 |||||| | | ||| | | ||| ||||| | ||||| | || |||| || || || Sbjct 424 ATCTCTTCTCTAATTCTCTTCATGGCATCGATGAATCTGTCCATCTCAATCTTGTCT-TC 482 Query 137828 AGACTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGCATG 137887 |||||| || || || | ||| | | |||| || || | |||| ||||||||||| Sbjct 483 AGACTCAGTTGGCTCAATCATGAGACTTCCAGCAACTGGGAAAGATACAGTAGGTGCATG 542 Query 137888 AAATCCATAGTCCATAAGTCTCTTTGCTATATC 137920 ||||||||||||||||||||||| |||||||| Sbjct 543 GAATCCATAGTCCATAAGTCTCTTAGCTATATC 575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578836548234760