Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5401 196 6e-45 seq18508 132 6e-26 seq2801 107 2e-18 >seq5401 Length=3445 Score = 196 bits (216), Expect = 6e-45 Identities = 616/950 (65%), Gaps = 21/950 (2%) Strand=Plus/Minus Query 75304 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAG 75363 ||||| ||| || || || || | |||||||| ||||| || | || | ||||| || Sbjct 2197 GTTCACTCATGCCACTCCTACTTTGTTCAATGCAGGTACTCCTAAGCCATAAATGTCAAG 2138 Query 75364 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 75423 ||||||||| | | ||||| |||||||||||||||||||||| || |||| | | Sbjct 2137 TTGCTTCCTCCTTATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTTAAGAA 2078 Query 75424 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 75483 || || ||||| | ||||| ||| | || || | || | | ||||| Sbjct 2077 CATCGCCTTGATTTCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGC 2018 Query 75484 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAG--ATGGTATTATTCCAATGCTT 75541 || | | || ||| || |||||||| ||| ||||| | | || ||||| Sbjct 2017 CACTGGCAGTTACATCAAGGGCACTAATGGTCA--CAGTAATGGTCTCGTACCCATGCTC 1960 Query 75542 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTC 75597 | || || || | || || | ||||| | |||| | || | | | ||||| || Sbjct 1959 AGAGTCTTCAATGAGACTGCTAGATATGTCGACCAAG-GAGGTGGCAAGAGAAAGGGTTC 1901 Query 75598 CATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACT 75657 |||| | ||||||||||||||||| || ||| || | || |||||| | || || Sbjct 1900 ATTCGCTATTTACTTGGAACCATGGCACGCAGATGTCTTCGATTTCCTTTAACTAAGAAA 1841 Query 75658 CAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 || || ||| | || || | ||||| | |||| | || ||||||||||| Sbjct 1840 GAATCACGGTAAAGAGGAACAAAGAGCAAGAGACTTGTTTTTCGCTCTCTGGATTCCAGA 1781 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGC 75777 || ||||||||| | || ||| | || | ||| | |||||||| || || | || Sbjct 1780 TCTATTCATGAAGAGAGTCCAGGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAAGC 1721 Query 75778 ACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGA 75837 || |||| ||| | || |||| || ||||| ||||| || |||||||| | Sbjct 1720 CAAGGGCCTCTTCGAAGTTCATGGCTAGGAATTCGAAGCTCTCTATACTAAGTATGAGCA 1661 Query 75838 GGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATC 75897 | || | | || || | ||| | | ||| | || ||| | |||| Sbjct 1660 ATAAGGAATTGGCAGAAAAACAATGAAAGCTCAAAAACTATGGGAAGCCATTATTGAATC 1601 Query 75898 ACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAA 75957 ||| | || |||||||| ||||| ||| | ||||||||| ||||| ||||| || Sbjct 1600 ACAAATTGAAACTGGAACTCCATACATGTTGTACAAGGATCACGCTAACAGCAAGAGCAA 1541 Query 75958 CCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACAC 76017 ||||||||| | ||||| |||||||| || || | ||| || ||| | |||||||| Sbjct 1540 CCAAAAGAACCTCGGAACCATCAAGAGTTCCAACTTGTGCTGTGAGATTATCGAGTACAC 1481 Query 76018 AGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA 76077 ||||| ||||||||||| | || || || | || || | || || || Sbjct 1480 CTCCCCAGATGAAGTAGCTGTTTGCAACCTTGCTTCCATATCTCTACCTAGATACGTGAA 1421 Query 76078 TGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAA 76137 || | | ||| || ||||| |||||||| || | || | | |||| Sbjct 1420 GGA------TGGTGTTTTCGACTATGAGAAACTTCACAAAGTTACTTATCAAATCACCAT 1367 Query 76138 AAATCTAAACCGAGTCATTGACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTC 76194 || | ||| || ||||||| | || || ||||| || ||| || ||| || Sbjct 1366 TAACTTGAACAGAATCATTGATGGCAACTTCTATCCATGCGATGA---AGCCAAAAACTC 1310 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || ||| |||||||||| || ||| | ||| |||||||||| || |||| Sbjct 1309 AAACATGAGACACAGACCAATCGGTATCGGTATTCAAGGTCTGGCTGATG 1260 >seq18508 Length=3287 Score = 132 bits (146), Expect = 6e-26 Identities = 689/1080 (64%), Gaps = 46/1080 (4%) Strand=Plus/Minus Query 75191 GATGGCATCC---TCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||||||| || || | || | |||||| ||||| | ||| | || || || || Sbjct 2398 GATGGCAACCAAATCCTTGAGAGACCACAGCACATGCTTATGAGAGTAAGTATTGGTATT 2339 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || |||||| |||| || | || ||||| ||||| |||| ||| ||| Sbjct 2338 CATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTGTGGTTT 2279 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||| || || ||||| || || || |||| ||||||| ||| ||||| |||| | Sbjct 2278 ACTCATGCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATG---AGTT-C 2223 Query 75368 TTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 75423 || ||| | || ||| || || ||||| || | ||||| | || |||| | | | Sbjct 2222 TTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTTAAAATA 2163 Query 75424 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACA---TCCATGATGTGAG 75480 ||| ||||||||| ||||| ||||| || | | || ||| ||||| || Sbjct 2162 AATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC--GATGTAAG 2106 Query 75481 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 75540 ||| | | || || | || ||||| || | ||| |||| | ||||||||| | Sbjct 2105 AGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGTT 2046 Query 75541 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTC 75597 || || || | ||| || | || || || ||| || | | ||||| | Sbjct 2045 AAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAAGGGAGC 1986 Query 75598 CATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACT 75657 |||| ||||| | ||||||||||| || |||||| || |||||| | | || Sbjct 1985 TTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTCAGAAA 1926 Query 75658 CAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 || || ||| | |||||| | | |||||| || || | | || |||| |||||| Sbjct 1925 GAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAGA 1866 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGG 75776 |||||||||| | ||||| | || | ||| |||| | |||||| | || | Sbjct 1865 TCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAATGAATG 1806 Query 75777 CACCAGGTCT--CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 | ||||| || || | || | ||||||||||||||| || |||| ||||||| Sbjct 1805 C-CCAGGACTTACTACTACATG--GGGTGAGGAGTTTGAGAAACTTTACATCGAGTATGA 1749 Query 75835 AGAGGAGGGTAGAG---CCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCT--A 75887 | ||||||| ||| |||||| || |||| | ||| || | | Sbjct 1748 AACCACTGGTAGAGGTCGCAA---GACTGTTAAGGC--TAGATGGCTCTGG--GGTTAAA 1696 Query 75888 TTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACA 75947 | | | || || | |||||||| || || |||||||||||||| |||||||| || | Sbjct 1695 TCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGCTTGCAATA 1636 Query 75948 AGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTT 76007 || ||| | | ||| | || ||||| ||||| || || |||||||| || || Sbjct 1635 GAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAGATCG 1576 Query 76008 TAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAA 76067 | || | || | ||||| |||||| || ||| | || || || | | || | Sbjct 1575 TCGAATTTACCAGTCCAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTG-CTTTAAAT 1517 Query 76068 AG---TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAA 76124 || ||| || | || || | ||||||||| || | ||| | | || | Sbjct 1516 AGATTCGTGTTAA--AGGAAACCTAAGAATATGATTATGAGAAGTTACATTACGTGACCA 1459 Query 76125 AGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG 76184 ||| |||| || |||||||| | | || || | |||| ||||| ||| | Sbjct 1458 AGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTCCTGAAG 1399 Query 76185 CGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 | |||| || ||| | |||||||||| ||||| | ||||| |||| | || |||| Sbjct 1398 CTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGTCTAAGGATTTGCAGATG 1339 >seq2801 Length=1577 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTC-CTTCGCCGAGCG 65081 |||||||| ||||||| || || ||| ||| | || |||| |||||| ||| | Sbjct 814 AAGAAGGCTGAATGGGCCATTAAGTGGATTGGTG-AGAG---CGCTAGCTTCGCTGAGAG 759 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || | | ||||| ||||||||||| || || |||||| | || | Sbjct 758 ACTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTT 699 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || ||||||||||| || |||||||||||| || ||||| | Sbjct 698 CTGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAG 639 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| || ||| | ||| || ||||| Sbjct 638 AGACGAAGGTATGCACACTGACTTTGC 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596402836425440