Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq21020 129 1e-24 seq22269 123 4e-23 seq18786 123 4e-23 seq5463 123 4e-23 seq2750 105 1e-17 >seq21020 Length=1175 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 || || ||||| |||||||||| || |||| || | |||| ||||| |||||| Sbjct 682 ATCTACATACCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTG 623 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | ||| || ||||| || || | |||||||||| Sbjct 622 TAGTCTGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGA 563 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||||||||| || || | || | ||| |||||| || || Sbjct 562 TCGGGTGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGAT 503 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || || || || || || || || || || || || || |||||||| Sbjct 502 GGCTCGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| | || | |||| || | || | ||| || || || Sbjct 454 ATTTGCATACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTG 395 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| || || || |||||||| || ||||| | |||||||||| Sbjct 394 TAGTCGGAGAGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGA 335 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| ||||| ||||| || || | || | |||| ||| ||||| || Sbjct 334 TCGGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGAT 275 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||| || ||||| || || || || || || || || || || |||| |||||| Sbjct 274 GGCTCAACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATTTT 216 >seq22269 Length=1399 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 658 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 599 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 598 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 539 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | ||| |||||| || || Sbjct 538 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 479 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || || || || || || |||||||| Sbjct 478 GGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 423 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || || |||| ||| | |||| ||||| || || Sbjct 886 ATTTGCATACCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTG 827 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | ||| |||||||| || || | ||| |||||| Sbjct 826 TAGTCTGAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGA 767 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | ||| ||| ||||| ||| Sbjct 766 TCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAA 707 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | || || || || || || || || || || || |||||||| Sbjct 706 GGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 >seq18786 Length=1170 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 514 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 573 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 574 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 633 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | ||| |||||| || || Sbjct 634 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 693 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || || || || || || |||||||| Sbjct 694 GGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 749 >seq5463 Length=1496 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 649 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 590 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 589 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 530 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | ||| |||||| || || Sbjct 529 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 470 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || || || || || || |||||||| Sbjct 469 GGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 414 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 877 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 818 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 817 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 758 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | ||| ||| ||||| ||| Sbjct 757 TCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAA 698 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | || || || || || || || || || || || |||||||| Sbjct 697 GGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 642 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || |||| ||| | |||| ||||| || | ||||| Sbjct 1097 ATACCACCTCTGAGTCTGAGGACCAAATGAAGAGTAG-ATCTTTCTGGAT-GTGTAGTCT 1040 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || | ||| |||||||| || || | ||| |||||||| || Sbjct 1039 GAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGT 980 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| ||| ||||| |||| ||| Sbjct 979 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 920 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || || || || || || || || |||||||| Sbjct 919 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 870 >seq2750 Length=4552 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || | |||| || | || | ||||| || || || || || Sbjct 4190 ACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 4249 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || ||||| || || || | ||||| ||||| || | ||||||||||||||| || Sbjct 4250 CAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4309 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| ||||| || |||| || | ||| || ||||| |||| ||| || Sbjct 4310 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4369 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| ||||| ||||| || | || || || || || | |||||| Sbjct 4370 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899402912858160