Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2750 123 5e-23 seq21020 96.9 6e-15 seq14578 95.1 2e-14 seq22269 86.0 1e-11 >seq2750 Length=4552 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| || || || || | ||| | ||||| || || ||||| || Sbjct 4190 ACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 4249 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || |||| ||||| | || |||||||| || | ||||||||| ||||| || Sbjct 4250 CAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4309 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| || || || || || || ||||| || | ||||| Sbjct 4310 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4369 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||||||| || ||||| || || || || | ||| |||| |||||| Sbjct 4370 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4420 >seq21020 Length=1175 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| | || || || | ||||| ||| || || || || || Sbjct 902 ACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 843 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || |||| || | ||||||||| || || || | ||| ||||| || ||||| Sbjct 842 CAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGG 783 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || ||| ||||| || || || || | ||| || Sbjct 782 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGAC 723 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || || ||||| || || ||||| | ||| |||| ||| Sbjct 722 GTCCAAAGTGATAGTCTTACCGGTCAAGGTTTTCACGAAGATCTACAT 675 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || | || || || | |||| ||||| |||||| || ||| Sbjct 676 ATACCTCCTCTCAATCTGAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCT 617 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | ||| || || || || || | ||||||||| || ||| Sbjct 616 GAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGT 557 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || || || || ||||| ||||| | || Sbjct 556 GGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCG 497 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | || |||| ||| || ||||| Sbjct 496 ACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 >seq14578 Length=3221 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/226 (71%), Gaps = 12/226 (5%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| |||| | |||||||| | || | |||| | ||||||| || ||| Sbjct 700 CCACCTCTGAGTCTAAGAACTAAATGGAGTGTTGACTCTGTTTAAATATTGTAGTCTCCC 759 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | | | |||| || |||| |||| ||||| |||||||| ||||||||||| || Sbjct 760 AATGTCCTTCCGTCCTCTAATTACATACCTGCAAATATTAATCTTTGTTGGTCAGGAGGA 819 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGT---ATCTGACGATTC 172018 || || |||||||||| |||||| ||| ||| | || || |||||| | | Sbjct 820 ATGCCCTCTTTATCTTAAATTTTA-AGCTTAAATTCTTCAATGGTCTCATCTGA-GTTAG 877 Query 172019 TACTTCTAGA--GTAATGGTTTTACCAGTTAATGTTTTAATGAATA 172062 || |||| || || ||||| || ||||| ||||||| ||||| Sbjct 878 TA----TAGATTGTGATAGTTTTGCCTGTTAAGGTTTTAACGAATA 919 >seq22269 Length=1399 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| | || ||||| | ||||| ||||| || || || ||| Sbjct 880 ATACCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCT 821 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||| || || || || || | ||| ||||| || ||| Sbjct 820 GAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGT 761 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || |||||||| | || Sbjct 760 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 701 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || | || || | ||| || ||||| Sbjct 700 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904882980545400