Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18508 140 1e-27 seq21462 111 5e-19 seq5817 104 7e-17 seq5401 100 8e-16 seq21212 89.7 2e-12 >seq18508 Length=3287 Score = 140 bits (154), Expect = 1e-27 Identities = 579/896 (65%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATA 155548 ||| ||||| ||||||| ||| || | | |||||| |||| ||| ||| |||| Sbjct 1424 ATCTATAATTTTATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGTAACTTCTCATA 1483 Query 155549 GTCAAATGTTT---TATCCTCATTTACA--AACATACCAAGACCAATAGACGCCAGATTA 155603 ||| || || | |||| || ||| || || | | ||||||| || |||||| Sbjct 1484 ATCATATTCTTAGGTTTCCT--TTAACACGAATCTATTTAAAGCAATAGAAGCTAGATTA 1541 Query 155604 CATACCGCAGTCTCCTTGTCGTC-GCTGTATTCTACAATCTCACAGCACAGGTTAGAACT 155662 || || || || | | | | | | | |||| || |||||| ||| ||||||||||| Sbjct 1542 CAGACAGCCA-CTTCATCTGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTAGAACT 1600 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 ||| || ||||| | ||| | || ||| ||||| || || |||||||| ||||| || || Sbjct 1601 CTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAAGCATCTTTGTAAAGCAT 1660 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 || || || || ||||| | || | || | || | |||||| | || || Sbjct 1661 ATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTT 1720 Query 155783 AATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAA-TCCT 155841 || |||| ||| || | ||||| | || || || ||| || |||| Sbjct 1721 AACAGTCTTGCGACCTCTACCAGTGGTTTCATACTCGATGTAAAG-TTTCTCAAACTCCT 1779 Query 155842 CACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTAT 155901 |||| | | | | ||||| ||||| | || || || | || | |||| || || Sbjct 1780 CACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACATGAGAGTCCAATCTTCAT 1839 Query 155902 TACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCT 155959 | | || || || ||| || | ||| | ||||| ||| ||||||||||| || Sbjct 1840 T--TGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAGAAAAGGTCTCT 1897 Query 155960 TGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGG 156019 || | ||| || | ||||||||||| | || | | ||| || | ||||||| Sbjct 1898 AGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCGTAGATATCAGC 1957 Query 156020 ATGGTGTGGCTCCAGATACATAGC-AAAACTACCATTCCTCTT--GCCACCCTGATCTAC 156076 || ||| || | ||| | ||| ||| || || ||| | || ||||| | ||| || Sbjct 1958 GTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCCAC 2017 Query 156077 ATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATT 156136 || | || || | |||||| || || ||| ||||| | ||||| ||| || || Sbjct 2018 GTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTTGAATATCCGTT 2077 Query 156137 GGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG-TAGTCCAATACCAC 156195 || || | || | || ||| | | ||| | || || | ||| ||||||| Sbjct 2078 TGTACCTCTGATGTAGGAGTCAGCAGCTCTTACA-TCGGACACTGAGACTCCGATACCAC 2136 Query 156196 CTG-ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAA 156254 | | | | ||| || || ||| || |||| ||| | |||||||| ||||| || Sbjct 2137 CAGCAGCCTTT-GAGATAATAGCAATTTATTTTAAAGTTTCAAAAATACCATCAATGGAG 2195 Query 156255 TCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTG 156314 || |||| | | ||| | |||| ||||| | | |||| ||||||||||| ||| Sbjct 2196 TCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTTGGTGTTCCAGAGTTA 2255 Query 156315 AATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || || || || || |||||| |||| || | | ||| ||||||| ||||| Sbjct 2256 AACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAATCGTAAGTCTC 2311 >seq21462 Length=4193 Score = 111 bits (122), Expect = 5e-19 Identities = 280/417 (67%), Gaps = 19/417 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCT--TAAATCCAT 288946 ||||| |||||||||||||| || | ||||| || || || || | ||| |||| Sbjct 2888 ATATCTGCTCTGTTTGTTGCAGCTAGTACAATAACTGACTC--TTCAGTACCAAAACCAT 2831 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| | | || |||||| || || | || | |||||| || ||| | |||| Sbjct 2830 CCATTTCTACCAGAAGTTGATTGAGAGTGTTATCACGTTCATCGTT---ACCAC-CGAAT 2775 Query 289007 CACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACG 289066 || || || |||| |||| ||||| ||||| || |||||||| | | | Sbjct 2774 TTACCTTGTCTCTTCTTT-----GCAACGGCATCGATTTCATCGATGAAAATAATTGAGG 2720 Query 289067 GAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 ||| |||| ||| || | |||| |||||||| | || ||||||| ||| || Sbjct 2719 GAGCCTTTTCTCTAGCTTTCTTGAATAGATCTCTTACTCTTGAAGCTCCAACACCGACGA 2660 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCT 289185 ||||||| || || || ||| | |||| | || | ||||| || ||||| ||||| Sbjct 2659 ACATTTCAACGAAGTCTGAACCTGATA-TGGACAAGAATGGCACTCCAGCTTCTCCTGCA 2601 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 |||||| | || || | || ||||| ||||| ||||| || |||| | | | || || Sbjct 2600 ACTGCCTTGGCAAGTAAAGTTTTACCAGTTCCTGGTGGGCCAACTAACAAAGCACCTCTT 2541 Query 289246 GGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 || | || || ||| || || ||| |||| |||| ||| || || || |||| Sbjct 2540 GGAATTTGAGCTCCA--AGCTTTTGATACTTCTTAGGGTCCTTCAAGAAATCAACAA 2486 >seq5817 Length=6009 Score = 104 bits (114), Expect = 7e-17 Identities = 258/387 (67%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTAT-TTCTTACGGTC 302550 || || || || ||||| ||||| | ||| || | |||||| | | ||||||| || Sbjct 2987 ATACCATCCTCACCGTAAAGGAAT--TAAATAATCT-GTTCTTTTGAAGTTCTTACAGTT 3043 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 |||||| | ||| | |||||| | | ||| || ||||| | ||||| |||||| Sbjct 3044 CCATCATACTTCACCATCACGTCTTCTAGAGCCTTAATCAAACGTCTTTGAATGTAACCA 3103 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 ||| | ||||| || ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3104 GTTTCTGCAGTTTTAACTGCTGTATCAATGAGACCCTCACGACCTCCCATAGCATGGAAG 3163 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | |||| || || || | | | | | || || ||||| || Sbjct 3164 AAGAATTCTTGAGGAGTTAATCCATTTAAATAACAATTTTCCACAAAACCTTTGCTTTCT 3223 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || || ||| || | ||||| || || | || | | | ||| |||| ||| Sbjct 3224 GGACCATAGTCATCTTTTGAGAAGTGAGGTAGTGATCTTCTGTGGAAACCGAATGGAATA 3283 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCA 302850 || || || || || || || || |||| || | || || || ||||| ||||||| | Sbjct 3284 CGTTTACCTTCTACATTTTGTTGACCCACACAAGCCATAATTTGGGAAATGTTTAAATTA 3343 Query 302851 CTGCCCTTGGAGCCAGCATTTACCATA 302877 || || || ||||||| ||||||| Sbjct 3344 GAACCTTTAGAACCAGCATATACCATA 3370 >seq5401 Length=3445 Score = 100 bits (110), Expect = 8e-16 Identities = 324/500 (65%), Gaps = 5/500 (1%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || | |||||||||||||| ||| |||||||||||||| || | ||||| |||| Sbjct 1482 TGTACTCGATAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGT 1541 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || |||||| ||||||||| | |||||||| ||||| || || || |||| Sbjct 1542 TGCTCTTGCTGTTAGCGTGATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTG 1601 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCG 155808 || | ||| | ||| || | | || || ||| || || | |||| Sbjct 1602 ATTCAATAATGGCTTCCCATAGTTTTTGAGCTTTCATTGTTTTTCTGCCAATTCCTTATT 1661 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 |||||| || |||| || | | | | |||| || | | || || || | Sbjct 1662 GCTCATACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGG 1721 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 | | |||||| || || | ||| | | | | || | || ||| |||| || Sbjct 1722 CTTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGAT 1781 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTC 155987 | ||| | ||| | || | ||| ||||| ||||| ||||| | ||||||||| Sbjct 1782 CTGGAATCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTG-TTCCTCTTTACCGTGATTC 1840 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || | ||| | | ||| || | ||| | || ||| |||| || ||||| || Sbjct 1841 TTTCTTAGTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAAT 1900 Query 156048 CTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| || ||||||||| || || || ||||| | |||||||| ||||||||| | Sbjct 1901 GAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTG 1960 Query 156105 AGCATAGGAATAATACCATT 156124 ||||| || | | |||||| Sbjct 1961 AGCATGGGTACGAGACCATT 1980 >seq21212 Length=6494 Score = 89.7 bits (98), Expect = 2e-12 Identities = 182/269 (68%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || || || ||||| ||||| |||||||||||||| || | || | ||| ||| Sbjct 5143 CTCTTCTTTCCAACTGCATCTATTTCGTCAATGAAGATAATTGCAGGGGCCTTTGATCTG 5084 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | ||| | |||||||| | || || |||| ||| || |||| ||||| || Sbjct 5083 GCTTTCTTAAACAGATCTCTTACTCTTGAGGCGCCAACACCTACGAACATCTCTACGAAG 5024 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| |||| | | || ||| | || || ||||| || ||||||||| | || || Sbjct 5023 TCGGAACCGGAAATTGAAAAGAAGGGGACTTTGGCTTCACCAGCTACTGCCTTGGCGAGC 4964 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | |||||||| || || ||||| |||| || | || | || ||| | || ||| Sbjct 4963 ATGGTCTTACCGCAACCTGGGGGTCCTACTAAAAGTGCACCTCTAGGGACTCTAGCTCCA 4904 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAA 289289 || ||| |||| ||| ||||||| Sbjct 4903 AGTTTCTGATACTTCT-TGGGATCTTTAA 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471395886082331