Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2750 118 9e-22 seq22269 86.0 5e-12 seq18786 86.0 5e-12 >seq2750 Length=4552 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 4420 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 4361 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 4360 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 4301 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 4300 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 4241 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||||||||| || | ||| |||| || ||||| |||| || Sbjct 4240 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGG 4191 >seq22269 Length=1399 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| || ||||| ||| | || |||||| Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 710 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 711 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 770 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | || || || || || || |||| |||||| | | || |||||| Sbjct 771 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 830 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| | || |||| | ||||| |||| || Sbjct 831 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGG 877 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| || ||||| ||| |||| ||||| Sbjct 879 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 938 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| ||||| | || |||||| Sbjct 939 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 998 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | || ||||| || || || || | |||||| || | || |||||| Sbjct 999 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1058 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| |||| | ||||| |||| || Sbjct 1059 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 1105 >seq18786 Length=1170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| || ||||| ||| |||| ||||| Sbjct 521 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 462 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| ||||| | || |||||| Sbjct 461 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 402 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | || ||||| || || || || | |||||| || | || |||||| Sbjct 401 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 342 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| |||| | ||||| |||| || Sbjct 341 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412729080408959