Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2801 105 1e-16 seq16373 96.9 5e-14 seq21550 93.3 7e-13 seq20812 93.3 7e-13 seq7858 93.3 7e-13 >seq2801 Length=1577 Score = 105 bits (116), Expect = 1e-16 Identities = 160/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| |||||||| ||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct 989 GGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTGAT 1048 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGT---GTCGGCGCCGAGGTC 796301 |||||| | ||||| |||| |||| |||| | || | ||||| | ||||||| Sbjct 1049 AAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAAT---CCTTAACGTCGGTGGCGAGGTC 1105 Query 796302 GACCTCCTCGGCGGTCCA-AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT-CCGT 796359 || ||||| | |||||| |||| || | || | | |||||||||| ||| || ||| Sbjct 1106 GATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTCGT 1164 Query 796360 TGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 | ||| ||| || | | |||||| | || ||||| || Sbjct 1165 T-GTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATC 1204 >seq16373 Length=3669 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 3374 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 3315 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 3314 GGAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATC 3255 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||| |||| || || || || ||||||| Sbjct 3254 TAACAAGCTTTGAGGCCTCAAGAGCGATCTTCTCGAAGATATCACCGATGAAGGAGTTCA 3195 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 3194 TGATGTGCATAGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 3135 Query 1485710 A 1485710 | Sbjct 3134 A 3134 >seq21550 Length=2725 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 2101 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 2160 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 2161 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 2220 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 2221 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 2280 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 2281 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 2340 Query 1485710 A 1485710 | Sbjct 2341 A 2341 >seq20812 Length=2701 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 2077 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 2136 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 2137 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 2196 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 2197 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 2256 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 2257 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 2316 Query 1485710 A 1485710 | Sbjct 2317 A 2317 >seq7858 Length=3697 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 3387 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 3328 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 3327 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 3268 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 3267 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 3208 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 3207 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 3148 Query 1485710 A 1485710 | Sbjct 3147 A 3147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913867545692357