Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq21020 86.0 5e-12 >seq21020 Length=1175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||| ||||||| || || ||| | || ||||| ||||| || | || ||| | Sbjct 216 AAAATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCA 275 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | || || ||||| || ||||| || | || ||| Sbjct 276 TCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGAT 335 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||||| |||| || || |||||| |||| |||| || ||| | | |||||| Sbjct 336 CAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTAC 395 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || | ||| |||| |||||| | |||| || Sbjct 396 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398768086502107