Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq16876 84.2 3e-11 seq14905 84.2 3e-11 seq7832 84.2 3e-11 seq1705 84.2 3e-11 >seq16876 Length=6634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 206 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 265 Query 114743 TAGA 114746 | || Sbjct 266 TGGA 269 >seq14905 Length=6642 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 206 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 265 Query 114743 TAGA 114746 | || Sbjct 266 TGGA 269 >seq7832 Length=6619 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 6416 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 6357 Query 114743 TAGA 114746 | || Sbjct 6356 TGGA 6353 >seq1705 Length=6603 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 198 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 257 Query 114743 TAGA 114746 | || Sbjct 258 TGGA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789935921543520