Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq22269 109 5e-19 seq5463 109 5e-19 seq18786 105 6e-18 seq21020 86.0 6e-12 >seq22269 Length=1399 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || ||||| ||| || || ||| ||||| Sbjct 400 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCGAGT 341 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| | || || ||||| ||||| ||||||||||| |||| Sbjct 340 TGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATC 281 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | |||||| ||||| | |||| ||| ||||| Sbjct 280 TTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCT 221 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || || || || ||||| || ||||| | |||||| Sbjct 220 GTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 187 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | ||||| | || || ||||| ||||| ||||||||| Sbjct 805 TCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 746 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | ||||| || || | ||||| ||||| | ||||| | Sbjct 745 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 686 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 685 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 1075 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 1016 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 1015 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 956 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 955 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTC 896 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 895 TTGACGAAGATTTGCAT 879 >seq5463 Length=1496 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || ||||| ||| || || ||| ||||| Sbjct 391 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCGAGT 332 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| | || || ||||| ||||| ||||||||||| |||| Sbjct 331 TGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATC 272 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | |||||| ||||| | |||| ||| ||||| Sbjct 271 TTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCT 212 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || || || || ||||| || ||||| | |||||| Sbjct 211 GTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 178 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || || ||||||| | || || ||||| ||||| ||||||||| Sbjct 796 TCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 737 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | ||||| || || | ||||| ||||| | ||||| | Sbjct 736 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 677 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 676 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 642 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | ||||| | || || ||||| ||||| ||||||||| Sbjct 1024 TCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 965 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | ||||| || || | ||||| ||||| | ||||| | Sbjct 964 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 905 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 904 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 870 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 1291 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 1232 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 1231 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 1172 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 1171 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTC 1112 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 1111 TTGACGAAGAT-TGCAT 1096 >seq18786 Length=1170 Score = 105 bits (116), Expect = 6e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| |||||||| ||| | ||||| | || || ||||| ||||| |||||||| Sbjct 822 GTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTT 881 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | |||||| ||||| | |||| Sbjct 882 GTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGAT 941 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 ||| ||||| || || || || ||||| || ||||| | |||||| Sbjct 942 GGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 985 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 325 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 384 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 385 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 444 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 445 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTC 504 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 505 TTGACGAAGATTTGCAT 521 >seq21020 Length=1175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| |||| || || ||| || || || || || Sbjct 871 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCG 812 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| | || || ||||| || || ||||||||||| |||||| ||| Sbjct 811 GCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTG 752 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| || || ||||| | |||| || || ||||||| ||| Sbjct 751 ACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTT 692 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||| ||| Sbjct 691 TTCACGAAGATCTACAT 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483285665758120