Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5401 163 7e-35 seq18508 120 7e-22 seq2801 114 3e-20 seq5817 95.1 3e-14 seq833 95.1 3e-14 >seq5401 Length=3445 Score = 163 bits (180), Expect = 7e-35 Identities = 330/484 (68%), Gaps = 7/484 (1%) Strand=Plus/Minus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| || || || ||| | ||||||||||| || ||||| | |||||| | ||||| || Sbjct 1978 TGGTCTCGTACCCATGCTCAGAGTCTTCAATGAGACTGCTAGATATGTCGACCAAGGAGG 1919 Query 110741 T---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | |||||||| || ||||| ||||| || | ||||| ||||| ||||| | || || Sbjct 1918 TGGCAAGAGAAAGGGTTCATTCGCTATTTACTTGGAACCATGGCACGCAGATGTCTTCGA 1859 Query 110798 ATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTA 110857 ||| | |||| | || ||||| || || |||||||||||| | || || |||| Sbjct 1858 TTTCCTTTAACTAAGAAAGAATCACGGTAAAGAGGAACAAAGAGCAAGAGACTTGTTTTT 1799 Query 110858 TGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCT 110917 || | |||||| ||||| |||||||||| | || || | | || ||| | || Sbjct 1798 CGCTCTCTGGATTCCAGATCTATTCATGAAGAGAGTCCAGGCTGACGGAGACTGGACACT 1739 Query 110918 TATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACC 110976 | | || || || || | || || | || || |||| | || || |||| | Sbjct 1738 TTTCTG-CCCCAACGAAGCCAAGGGCCTCTTCGAAGTTCATGGCTAGGAATTCGAAGCTC 1680 Query 110977 TTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAACAAATTCCAGCTCAAGAACTT 111035 | || || ||||| || |||| || | | | ||| ||| ||||||| |||| Sbjct 1679 TCTATACTAAGTATGAGCAATAAGG-AATTGGCAGAAAAACAATGAAAGCTCAAAAACTA 1621 Query 111036 TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 ||| || ||||||||||| |||||||||||||||| || || ||||| || ||| Sbjct 1620 TGGGAAGCCATTATTGAATCACAAATTGAAACTGGAACTCCATACATGTTGTACAAGGAT 1561 Query 111096 CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || ||| |||| || |||| ||| | ||||| || ||| | || |||||| Sbjct 1560 CACGCTAACAGCAAGAGCAACCAAAAGAACCTCGGAACCATCAAGAGTTCCAACTTGTGC 1501 Query 111156 TGTG 111159 |||| Sbjct 1500 TGTG 1497 >seq18508 Length=3287 Score = 120 bits (132), Expect = 7e-22 Identities = 180/255 (71%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 110675 TTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA 110734 ||||| |||| | |||||||||||| || ||||| ||||| |||| ||| ||| || | Sbjct 2069 TTCAAATGGATTGATTCCAATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTA 2010 Query 110735 AGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATAT 110791 ||||||| || ||||| || | || ||| ||||| | ||||| ||||| | ||||| Sbjct 2009 AGGTGGTGGAAAAAGAAAGGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATAT 1950 Query 110792 ATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTT 110851 | || ||| | |||| | || ||||| || ||||| | ||||| | || | Sbjct 1949 CTACGACTTCCTTTAACTCAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCT 1890 Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911 || || || | |||| | ||||| | ||||||| | | ||| ||| ||||| || Sbjct 1889 TTTCTACGCTCTTTGGACTCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTG 1830 Query 110912 GTCTCTTATGTGTCC 110926 | |||| |||||||| Sbjct 1829 GACTCTCATGTGTCC 1815 >seq2801 Length=1577 Score = 114 bits (126), Expect = 3e-20 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 ||||| || |||||||| ||||| |||||| | ||| ||||| || || ||| Sbjct 814 AAGAAGGCTGAATGGGCCATTAAGTGGATT---GGTGAGAGCGCTAGCTTCGCTGAGAGA 758 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||| ||| | | || || || ||||| ||||| | ||||| | ||||| Sbjct 757 CTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTC 698 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||||||||||||||| | ||||| || ||| | || || ||| | |||| || ||| Sbjct 697 TGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGA 638 Query 131981 GATGAAGCATTGCATACTGAATTTGCT 132007 || |||| |||| ||||| |||||| Sbjct 637 GACGAAGGTATGCACACTGACTTTGCT 611 >seq5817 Length=6009 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 |||||| ||| | || || || | || || || |||||||||||| | |||| |||| Sbjct 4350 ATGATTATGTTATCTTTAACAGATAGCCTTCTCTCCATAAAATGTCTTTAATGGGACATA 4291 Query 305382 AAGTCAAAGTATTATCTGGATTGACA--TTTC-GATTAAATGTAAGTGCTTGTACGCCTT 305438 ||||||||| | | ||| || |||| || | ||| | |||| ||| |||| Sbjct 4290 GAGTCAAAGTGCTTCC---ATTCTCAACTTTCAGACTTAATTTGAGTGTCACTACTCCTT 4234 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | ||||| ||||| ||||| ||||||||||| |||||||||||| || Sbjct 4233 ACAATGCTGATTTCGATGGTGATGAAATGAACATGCATGTACCTTAA 4187 Score = 84.2 bits (92), Expect = 5e-11 Identities = 176/261 (67%), Gaps = 20/261 (8%) Strand=Plus/Minus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAA 304948 |||||| || |||| ||| | ||||||||||||||| || || || | || || Sbjct 4777 CAATATTATGTTGCTACAGTGATGGATAATGAAATTTAAGGG--TAACCA---ACCTAAA 4723 Query 304949 AG-----ATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 || |||||| | || ||||| | |||| | | | ||| ||| ||||| |||| Sbjct 4722 AGCACAAATCTGGAAAGCCCTTAAAAGCTATTCGTTCAAGACTTAGAGGAAAAGAAGGTC 4663 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACAC 305063 || |||| || ||||||||||| || | || ||||| ||| | | ||| || |||| Sbjct 4662 GTCTTCGTGGCAATCTAATGGGTAAGAGAGTCGATTTCTCTGCTCGTACTGTCATTACAC 4603 Query 305064 CTG-----ATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAA 305118 | | ||||||| ||||| || || | || || || ||||||| |||| Sbjct 4602 CAGATCCCATTCTCAGATTAG-----ATCAACTTGGTGTACCGCAACAAATTGCACTAAA 4548 Query 305119 ACTAACATTTCCAGAGAAAGT 305139 || ||| |||| |||| ||| Sbjct 4547 TCTGACAGTTCCCGAGACAGT 4527 >seq833 Length=9992 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/157 (74%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 ||||||| |||||||| | |||| | | || || |||||||||| || | ||| Sbjct 5050 TGTTCAACAGGCAACCTAGTTTACATAGAGTCTCAATTATGGCTCATAGAGCAAGAGTTA 4991 Query 305394 T---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATT 305450 | ||| || || || |||| || | | | | |||||| ||||||||||| |||| Sbjct 4990 TGCCATCAAGA---ACTTTAAGATTTAACGAATGCGTTTGTACTCCTTATAATGCAGATT 4934 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| |||||||||||||| ||| ||||| |||| Sbjct 4933 TTGATGGTGATGAAATGAATATACATTTACCTTAATC 4897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186472747349843