Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq21020 136 4e-27 seq5463 111 1e-19 seq22269 107 2e-18 seq18786 102 7e-17 >seq21020 Length=1175 Score = 136 bits (150), Expect = 4e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| |||| | Sbjct 447 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGA-GCCATC 505 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || ||| || |||||||| ||||| || |||||||| Sbjct 506 AGACACTATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 565 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||||| || | || |||||| ||||| ||||||| |||| | |||| | ||| Sbjct 566 ACAGAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAG--ACTAC 623 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| ||| |||| || || | |||||||||||||| Sbjct 624 AATATTCAAAAAGAATCTACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 673 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || ||||| || ||||| || | ||||| | || |||||| | ||| || ||| Sbjct 684 TTCGTGAAAACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACCATC 743 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 ||| | || ||| || || || || || ||||| || |||||||| ||||||||| Sbjct 744 GAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTC 803 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | || ||| |||||||| ||||| | |||| | | ||||| ||||| || ||||| Sbjct 804 ATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAG 863 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCA 25411 || || || | || || || | ||| | ||||| || ||||| || Sbjct 864 GAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTCAATGAACA 911 >seq5463 Length=1496 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| ||| | Sbjct 642 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGA-GCCTTC 700 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| || || || || ||||| || |||||||| Sbjct 701 AGATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 760 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 761 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 820 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 821 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 868 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || || |||| | Sbjct 414 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 472 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 473 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 532 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 533 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 592 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 593 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| ||| | Sbjct 870 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGA-GCCTTC 928 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| || || || || ||||| || |||||||| Sbjct 929 AGATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 988 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||| | || ||| || ||||| ||||||| |||| | | || ||| | Sbjct 989 ACAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTAC-A 1047 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||| ||| || ||||||| || | ||| | ||||| || Sbjct 1048 CATCCAGAAAG-ATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGG 1094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 183 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 242 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 243 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 302 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 || ||||||||||| | || ||||| ||||||||||| | |||| |||| ||| | Sbjct 303 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTC--CGACT 360 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 361 ACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 412 >seq22269 Length=1399 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| ||| | Sbjct 651 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGA-GCCTTC 709 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| || || || || ||||| || |||||||| Sbjct 710 AGATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 769 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||| | || ||| || ||||| ||||||| |||| | | || ||||| Sbjct 770 ACAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAA 829 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| || ||||||| || | ||| | ||||| || Sbjct 830 CATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGACTCAGAGGTGG 877 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || || |||| | Sbjct 423 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 481 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 482 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 541 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 542 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 601 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 602 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 649 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 192 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 251 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 252 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 311 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 || ||||||||||| | || ||||| ||||||||||| | |||| |||| ||| | Sbjct 312 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTC--CGACT 369 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 370 ACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 421 >seq18786 Length=1170 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || || |||| | Sbjct 749 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 691 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 690 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 631 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 630 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 571 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 570 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 980 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 921 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 920 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 861 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||||||||||| | || ||||| ||||||||||| | |||| | || || ||| Sbjct 860 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTAC 801 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 800 AACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444969979424160