Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2801 178 2e-38 >seq2801 Length=1577 Score = 178 bits (196), Expect = 2e-38 Identities = 380/555 (68%), Gaps = 26/555 (5%) Strand=Plus/Minus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 |||||||| ||| | ||||| | | || ||| ||| | || ||| | |||||| Sbjct 1204 GATAACCCAAACAGATTTGTTATCCTTCCAATCAAGTACAACGACATCTGGAAGATGTAC 1145 Query 1455791 CAAAAAGGCC-GAGGCCTCCTTT-TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--- 1455845 || | || || | || |||| |||||| | ||||| ||||||||| | ||||| Sbjct 1144 ---AAGGACCAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGACCTCGCCACCGACGTT 1088 Query 1455846 ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCC 1455905 | || | |||| | || | |||| ||||| | || || |||||||||||||| ||| Sbjct 1087 AAGG---ATTGGGAGAGACTCAACGACAACGAGAGACACTTTATCAAGCACGTCCTTGCC 1031 Query 1455906 TTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC---GGCCGCTTTA-TGA 1455961 |||||||| ||| || || ||||| ||||||||| ||| | || || ||| Sbjct 1030 -TTTTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAGATTCTGTACTGA 972 Query 1455962 AAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACA 1456021 || ||||| | ||||| ||||| | || || || ||||| || || || |||| Sbjct 971 AA----TCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGATGGAGAACA 916 Query 1456022 TCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081 | ||||| || || ||||| | || ||||||||| | ||| ||||| |||||||| Sbjct 915 TTCACTCAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACACGAGAAGG 856 Query 1456082 ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGA 1456141 | |||||| |||||| | | || || | || ||||| || ||||| | Sbjct 855 AGTTCCTCTTCAAAGCCATCACTAACATCCCAGTTGTAACTAAGAAGGCTGAATGGGCCA 796 Query 1456142 TGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC 1456201 | |||||||| | ||| | || | ||| || ||| | || | | || || || Sbjct 795 TTAAGTGGATTGGTGA-GAGCG-CTAG---CTTCGCTGAGAGACTAATTGCTTTCGCTGC 741 Query 1456202 -GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260 ||||||||||||| ||||| || |||||| | ||||| ||||| |||||||| || Sbjct 740 TATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAAGCGTGG 681 Query 1456261 CCTCATGCCCGGTCT 1456275 ||||||||| ||||| Sbjct 680 CCTCATGCCAGGTCT 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175654247546806