Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18508 210 3e-49 seq5401 168 9e-37 seq2801 113 6e-20 >seq18508 Length=3287 Score = 210 bits (232), Expect = 3e-49 Identities = 504/751 (67%), Gaps = 16/751 (2%) Strand=Plus/Plus Query 69091 GCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA 69150 |||||||| ||||| | || ||||| || || ||||| ||||| ||||||| || | Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1397 Query 69151 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACT 69210 ||||| |||| |||||| ||||| |||||||||||||||| ||||| | | || | || Sbjct 1398 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 1456 Query 69211 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAAT-CGTCCAT---CTATAACA--AACAT 69263 || ||||| | || || | ||||| || | | | || ||||| || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 ||| | || | ||| ||||||||||| || || || |||| | | | | | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| || || || ||| || || || || || ||||||| || || ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || || || |||||||| ||| | ||||||||||| || | ||||| || || || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTCTCTT--TTTCATA 69500 | ||| | ||||| || | | |||||| || || | | ||||||| Sbjct 1697 TTAACCCCAGAGCCATCTAGCCTTAA---CAGTCTTGCGACCTCTACCAGTGGTTTCATA 1753 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | | || || || || || || ||||| | | | ||| || |||||||| Sbjct 1754 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 1813 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 ||||||||| | | ||| | |||| | | ||||| | |||| || ||||| ||| | Sbjct 1814 TGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGT 1873 Query 69621 CCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||||||||| || ||| || ||||| | |||||| ||||| || || ||| ||| | | Sbjct 1874 CCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGA 1932 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 | | || || || ||||||| ||||||||||| | ||| | || | ||||| Sbjct 1933 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 1992 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 || ||| || || | ||| | |||||| || |||| ||| | || | | ||| | Sbjct 1993 TTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTG 2052 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCC 69830 |||| | ||||| || | || ||||| || Sbjct 2053 GAATCAATCCATTTGAATATCCGTTTGTACC 2083 >seq5401 Length=3445 Score = 168 bits (186), Expect = 9e-37 Identities = 551/847 (65%), Gaps = 12/847 (1%) Strand=Plus/Plus Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || || || || | || || ||||| ||||| | |||||||| | || Sbjct 1517 TTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTAGCGTGATCCTTGTACAACATG 1576 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 | ||||| ||||||||||| || ||||| ||||| | || ||| | ||| || Sbjct 1577 TATGGAGTTCCAGTTTCAATTTGTGATTCAATAATGGCTTCCCATAGTTTTTGAGCTTTC 1636 Query 69469 ATTACGGTCTTGTAACGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTCGAATTCAT 69526 ||| | | || | | ||| | || ||||| | ||||| || ||||||||| | Sbjct 1637 ATT--GTTTTTCTGCCAATTCCTTATTGCTCATACTTAGTATAGAGAGCTTCGAATTCCT 1694 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 || ||| || | || ||| || || || | | || ||| | | | Sbjct 1695 AGCCATGAACTTCGAAGAGGCCCTTGGCTTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGT 1754 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 || ||| |||| ||||| |||||||| |||||||| ||||| | ||| | ||||| | Sbjct 1755 CAGCCTGGACTCTCTTCATGAATAGATCTGGAATCCAGAGAGCGAAAAACAAGTCTCTTG 1814 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 ||| | ||| || || || ||| ||| | || | || || || | | ||| | | Sbjct 1815 CTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTAAAGGAAATCGAAGACATCTGCGT 1874 Query 69707 GCCATGGTTCTAGATATATCGCCA-TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 |||||||||| | || || || | ||| ||| || || ||||| || || | Sbjct 1875 GCCATGGTTCCAAGTAAATAGCGAATGAA-CCCTTTCTCTTGCCACCTCCTTGGTCGACA 1933 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 ||||| ||||| | ||| ||||||| ||||| || | | ||||||| | |||||| Sbjct 1934 TATCTAGCAGTCTCATTGAAGACTCTGAGCATGGGTACGAGACCATTACTGTGACCATTA 1993 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || || ||||| || | || | || || || || ||||| | || || Sbjct 1994 GTGCCCTTGATGTAACTGCCAGTGGCTCTGATGTTGTGAACAGCCAGACCCACACCACCA 2053 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTT--TCAATGTGTCATATATACCCTCTATGCTAT 69943 || ||| || || | || | ||| | | || ||||| ||||| | || | Sbjct 2054 GCTGATTTTGAAATCAAGGCG--ATGTTCTTAAGGGTATCATAGATACCGTTGATTGAGT 2111 Query 69944 CATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT-AGTTCCCGCATTA 70002 | || |||| |||| || || || || ||||||| ||| || ||| || ||||| Sbjct 2112 CGTCCTTCATCATAAGGAGGAAGCAACTTGACATTT-ATGGCTTAGGAGTACCTGCATTG 2170 Query 70003 AATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA 70062 || || ||||||| || |||||||||||| | ||| | || ||||| |||||||| Sbjct 2171 AACAAAGTAGGAGTGGCATGAGTGAACCATCTGTCACTCATGAGGTTGTAAGTTTCAATG 2230 Query 70063 GCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 ||||| || |||||| | || || |||| | || | ||||||||| || || ||| Sbjct 2231 GCTGAATCGATATCCTTTTTGTGGATACCTACAGACACTCTCATCAACATGTGTTGTGGT 2290 Query 70123 CGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCA 70182 | || || | || ||| | || | | ||| ||| | |||| || || || || Sbjct 2291 CTCTCAACGATCTTTGAATTGACCTTTAGTAAGTAGGATCTCTCCAAGGTCTTGAAACCG 2350 Query 70183 AAATAGT 70189 ||||||| Sbjct 2351 AAATAGT 2357 >seq2801 Length=1577 Score = 113 bits (124), Expect = 6e-20 Identities = 393/602 (65%), Gaps = 16/602 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||| || | || || ||||| ||| | || || || || ||||| Sbjct 608 GCAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAG 667 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || |||||||| || ||||| || || | |||| ||| |||| || |||| Sbjct 668 ACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTG-AGCAGAAGGATCCTGAGAAGA 726 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTAT 39791 ||||||| || | || || || |||| |||||||| || | || | | ||| | Sbjct 727 AGATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCA- 785 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCA 39850 |||||||| ||||| ||||| ||||| ||||| || | |||| | || || Sbjct 786 --ATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGA-TGTTAGTGATGGCT 842 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA--ACAGACTAT 39908 || ||||| | | || || | || | | || || || | || || | Sbjct 843 TTGAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGA--GT 900 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 | | ||||| || ||||| || ||| ||| || || || || ||||| | |||||| | Sbjct 901 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 960 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 || ||| | || | ||| ||||| | || | || || || || ||||| || | Sbjct 961 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 1020 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || ||||| || | || || || ||||| | | | || | | | | | | | || Sbjct 1021 CAGCGAAAAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCC 1080 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC-TCTGCC 40147 | || || | || | | | || | ||| |||| ||||| || | ||| |||| Sbjct 1081 AATCCTTAACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-G 1139 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 | |||||||| ||||| || || || | ||||||| ||||||||||| ||||| Sbjct 1140 TCCTTGTACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGG 1199 Query 40208 TT 40209 || Sbjct 1200 TT 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686716783231320