Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21204 91.5 1e-13 seq3952 86.0 5e-12 >seq21204 Length=2706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 208/312 (67%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAAA- 19610 |||||||| || | ||||| | || |||||||| | ||||||||||| || | ||| Sbjct 1153 CACATTATCATTTTCGATGAGATCGATGCAATCTGCAGACAAAGAGGTTCAGGAGGAAAC 1212 Query 19611 --------TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||||| | || || || ||||| ||||||| || || | |||||||| Sbjct 1213 TCAGGCACAGGAGTAAACGAAACAGTAGTCAACTAACTCCTCTCCAAGATGGACGGTGTG 1272 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || |||||| || ||| | || || |||||||| || ||| || | || || Sbjct 1273 GACTCACTGAACAACATTCTCGTGATAGGCATGACAAACAGAAAAGATATGATTGATGAG 1332 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | || |||| ||| | ||||| ||| | | |||||| ||| || ||||| | | Sbjct 1333 GCTATGCTAAGACCTGGTAGATTGGAGATACATTTGGAAATTGGCTTGCCTGATGAGTTT 1392 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCTTTTAAA 19841 || | | || || |||| || || | ||| |||||| | |||||| | | | Sbjct 1393 GGTAGAAGACAGATCTTTGACATTCACAC-TAAACACATGCGTGAGAATAACTTACTCAG 1451 Query 19842 TGACGATGTAGA 19853 ||| ||||| || Sbjct 1452 TGAAGATGTTGA 1463 >seq3952 Length=2703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 207/312 (66%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAAA- 19610 |||||||| || | ||||| | || ||||| || | ||||||||||| || | ||| Sbjct 1554 CACATTATCATTTTTGATGAGATCGATGCAATTTGCAGACAAAGAGGTTCAGGAGGAAAC 1495 Query 19611 --------TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||||| | || || || ||||| ||||||| || || | |||||||| Sbjct 1494 TCAGGCACAGGAGTAAACGAAACAGTAGTCAACTAACTCCTCTCCAAGATGGACGGTGTG 1435 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || |||||| || ||| | || || |||||||| || ||| || | || || Sbjct 1434 GACTCACTGAACAACATTCTCGTGATAGGCATGACAAACAGAAAAGATATGATTGATGAG 1375 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | || |||| ||| | ||||| ||| | | |||||| ||| || ||||| | | Sbjct 1374 GCTATGCTAAGACCTGGTAGATTGGAGATACATTTGGAAATTGGCTTGCCTGATGAGTTT 1315 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCTTTTAAA 19841 || | | || || |||| || || | ||| |||||| | |||||| | | | Sbjct 1314 GGTAGAAGACAGATCTTTGACATTCACAC-TAAACACATGCGTGAGAATAACTTACTCAG 1256 Query 19842 TGACGATGTAGA 19853 ||| ||||| || Sbjct 1255 TGAAGATGTTGA 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397347673739815