Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5401 176 6e-39 seq18508 134 2e-26 seq2801 116 5e-21 >seq5401 Length=3445 Score = 176 bits (194), Expect = 6e-39 Identities = 615/952 (65%), Gaps = 25/952 (3%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||||| ||| | ||| || |||||||||| ||| || || ||| | Sbjct 1260 CATCAGCCAGACCTTGAATACCGATACCGATTGGTCTGTGTCTCATGTTTGAGTTTTTGG 1319 Query 111111 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 | ||| || ||||| || || | ||||||| || ||| | || |||| | Sbjct 1320 CT---TCATCGCATGGATAGAAGTTGCCATCAATGATTCTGTTCAAGTTAATGGTGATTT 1376 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 111227 | || | || |||||||| ||||| || ||| | | || || || || Sbjct 1377 GATAAGTAACTTTGTGAAGTTTCTCATAGTCGAAAACACCA------TCCTTCACGTATC 1430 Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 | || || | || || || | ||||||||||| ||||| |||||||| | Sbjct 1431 TAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGA 1490 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||| || || |||||||||||||| || || || | ||||||||||| ||||| Sbjct 1491 TAATCTCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGC 1550 Query 111348 TGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||| || | ||||||||| | |||||| || || || || || | ||||||| | | Sbjct 1551 TGTTAGCGTG-ATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATA 1609 Query 111407 ATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCTCCGCCTCGT 111464 || || | ||| | | ||| | || || | || | ||| | ||| | Sbjct 1610 ATGGCTTCCCATAGTTTTTGAGCT--TTCATTGTTTTTCTGCCAATTCCTTATTGCTCAT 1667 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 |||| || ||||| ||||| || |||| || | ||| |||| || || | || Sbjct 1668 ACTTAGTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGT 1727 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 || |||||||| | ||| | || | ||| || | ||||||||| || ||||||| Sbjct 1728 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAA 1787 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||| || | |||| | ||||| | || || | ||| || || || || Sbjct 1788 TCCAGAGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1847 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 | |||||| || | || ||| ||||||||||| || | || | |||| || |||| Sbjct 1848 GTTAAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCT 1907 Query 111705 TTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||| | || |||| | ||||| | || || | || || || | ||||| | Sbjct 1908 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGG 1967 Query 111762 GAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 | | | ||||| ||| |||||||| || ||| || | | ||||||| | Sbjct 1968 GTACGAGACCATTACTG--TGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGAT 2025 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | || | || || | ||| ||||| | ||||| || || | | |||| Sbjct 2026 GTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCGATGTTCTTAAG 2085 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 || |||||||||||||||||||||| ||||| | | ||||||||||| ||||| Sbjct 2086 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACAT 2145 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 | || | || ||||| |||||||| | || || || || ||| ||||| Sbjct 2146 TTATGGCTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAAC 2197 >seq18508 Length=3287 Score = 134 bits (148), Expect = 2e-26 Identities = 420/639 (66%), Gaps = 26/639 (4%) Strand=Plus/Plus Query 111482 TCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-TCTGGACAGAAAAGA 111538 ||||||||||||||| | || | || || ||||| || || | |||||| | ||| Sbjct 1770 TCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCATTTGGACACATGAGA 1826 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| | || | | ||||| | |||||||||| |||||| |||| || | | Sbjct 1827 GTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAG 1886 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || || |||||| | | |||||| | ||| || || || | | |||||| || Sbjct 1887 AAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCG 1946 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 111715 |||||| ||||||||||| |||| |||||| |||| || |||||||| | ||| Sbjct 1947 TAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCA 2006 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 ||| || || || | || ||| | || || || | ||||||||| | |||| | Sbjct 2007 CCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTT 2066 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGC 111832 || | || ||||| || | || || | | ||||| ||||| ||| || | Sbjct 2067 GAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACTGAG- 2123 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | || ||||| ||||| ||||||||| ||| | | | |||| || | ||| Sbjct 2124 ACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATA 2183 Query 111893 CCGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 || | || ||||| || || ||| || | ||| ||| |||| ||||| ||| | Sbjct 2184 CCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT---CATCTAAGGTTT 2239 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 |||||| |||| || || || ||||| || || ||| | ||| ||| |||| Sbjct 2240 TGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAA 2299 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 ||||| ||||| || | || |||| |||||| || || || || || | ||| Sbjct 2300 ATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAATACTTACTCTCAT 2359 Query 112069 GAACATGTACTGTGGGGTTTCCATGA---GGATGCCATC 112104 | ||||| |||||| | || | || || ||||||| Sbjct 2360 AAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 2398 >seq2801 Length=1577 Score = 116 bits (128), Expect = 5e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| || |||||||||||| |||||| Sbjct 612 GCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCT 671 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 672 GGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATG 731 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAAA 122837 ||||| | | || || |||| || | || |||||| |||| || | || ||| Sbjct 732 CCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAAT 787 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || || ||||||| |||||||| Sbjct 788 CCACTTAATGGCCCATTCAGCCTTCTT 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627856441504800