Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq18508 199 5e-46 seq5401 174 2e-38 seq2801 122 1e-22 >seq18508 Length=3287 Score = 199 bits (220), Expect = 5e-46 Identities = 733/1126 (65%), Gaps = 49/1126 (4%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTC--AA 104194 ||||||||| ||| || ||||||||| ||| ||| | || ||||||| | |||| || Sbjct 2458 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 2400 Query 104195 CGGCTCGATGGTGTCTTGATG---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATC 104251 | |||| | || || | |||||| ||||| | ||| | || || Sbjct 2399 AG-----ATGGCAACCAAATCCTTGAGAGACCACAGCACATGCTTATGAGAGTAAGTATT 2345 Query 104252 GGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGT 104311 ||||||||| |||||| |||| || | || ||||| ||||| |||| ||| Sbjct 2344 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 2285 Query 104312 ATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCC 104371 ||| | ||| || || ||||| || || || |||| ||||||| ||| | ||| Sbjct 2284 TGGTTTACTCATGCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATG--- 2228 Query 104372 AGTTGCTTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCT 104427 |||| ||| ||| | || ||| || || ||||| || | ||||| | || |||| | Sbjct 2227 AGTT-CTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTT 2169 Query 104428 TACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACA---TCCATGA 104484 | | ||| ||||||||| ||||| ||||| || | | || ||| || Sbjct 2168 AAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC--GA 2112 Query 104485 TGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCC 104544 ||| ||||| | | || || | || ||||| || | ||| |||| | ||||| Sbjct 2111 TGTAAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCC 2052 Query 104545 AATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAA 104601 |||| | || || || | ||| || | || || || ||| ||| | |||| Sbjct 2051 AATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAA 1992 Query 104602 GGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTT 104661 |||| || |||| |||||| |||| ||||||||||| |||||| || |||||| | | Sbjct 1991 GGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACT 1932 Query 104662 GCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 104721 | || || ||| | || ||| | | || || |||| |||||| |||| Sbjct 1931 CAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGAC 1872 Query 104722 TCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 ||||||||| ||||||| |||||||| | | || ||||| ||||| | |||||| | Sbjct 1871 TCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAA 1812 Query 104782 -CAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGT 104840 || || || || || | | | ||||||||||||||| ||||||| ||| Sbjct 1811 TGAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATCGAGT 1753 Query 104841 ACGA-------GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAA 104893 | || || || |||||| ||||| | | || || || | | || || | Sbjct 1752 ATGAAACCACTGGTAG-AGGTCGCAAGACTGTTAAG--GCTAGATG--GCTCTGGGGTTA 1698 Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 || | ||||||||| |||||||||||| || || |||||||||||||| || || Sbjct 1697 --AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGCTTGC 1640 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 || ||| || | | ||| | || || |||||||| || || || || || Sbjct 1639 AATAGAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAG 1580 Query 105014 ATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 ||| | ||||||| ||| | |||||| |||||| ||||| || || || || ||| | Sbjct 1579 ATCGTCGAATTTACCAGTC-CAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTGCTTT 1521 Query 105073 CCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAAGTTA 105131 | | ||| || | | |||| || ||||||||| || | || | || | Sbjct 1520 AAATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTACGTGA 1462 Query 105132 CGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 105191 | || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 1461 CCAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTCCTG 1402 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 ||| | || || ||| | |||||| | |||||||| | ||||| Sbjct 1401 AAGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGT 1356 >seq5401 Length=3445 Score = 174 bits (192), Expect = 2e-38 Identities = 618/953 (65%), Gaps = 27/953 (3%) Strand=Plus/Minus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||| || || || || | |||||||| ||||| || | || ||||||| || Sbjct 2197 GTTCACTCATGCCACTCCTACTTTGTTCAATGCAGGTACTCCTAAGCCATAAATGTCAAG 2138 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 ||||||||| | | ||||| |||||||||||||||||||||| || |||| | | Sbjct 2137 TTGCTTCCTCCTTATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTTAAGAA 2078 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 104493 || || ||||| | ||||| ||| | || || | || | | ||||| Sbjct 2077 CATCGCCTTGATTTCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGC 2018 Query 104494 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAG--ATGGTATTATTCCAATGCTT 104551 || | | || ||| || |||||||| ||| ||||| | | || ||||| Sbjct 2017 CACTGGCAGTTACATCAAGGGCACTAATGGTCA--CAGTAATGGTCTCGTACCCATGCTC 1960 Query 104552 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCA---AGCTGGGCGTCGAAAGGGATCT 104608 | || || || | || || | ||||| | || || ||| ||||||| || Sbjct 1959 AGAGTCTTCAATGAGACTGCTAGATATGTCGACCAAGGAGGTGGCAAGAGAAAGGGTTCA 1900 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 |||| | || | || ||||||||||| ||| || | || |||||| | | | Sbjct 1899 TTCGCTATTTACTTGGAACCATGGCACGCAGATGTCTTCGATTTCCTTTAACTAAGAAAG 1840 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 || || ||| | ||||| | | || | || | || | |||||||||||||||||| Sbjct 1839 AATCACGGTAAAGAGGA-ACAAAGAGCAAGAGACTTGTTTTTCGCTCTCTGGATTCCAGA 1781 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 104787 ||| |||||||||||||| ||| || | ||| | || || || || || | || Sbjct 1780 TCTATTCATGAAGAGAGTCCAGGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAAGC 1721 Query 104788 ACCTGGTCTCTCCGATG-CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG 104846 || |||| ||| | | ||| | |||| || ||||| || || || ||||| ||| Sbjct 1720 CAAGGGCCTCTTCGAAGTTCATGGCT-AGGAATTCGAAGCTCTCTATACTAAGTATGAGC 1662 Query 104847 AAGAAGG--TCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAA 104904 || |||| | || || || || |||| | | ||| |||| ||| | | Sbjct 1661 AATAAGGAATTGGCAGA--AAAACAATGAAAGCTCAAAAACTATGGGAAGCCATTATTGA 1604 Query 104905 GTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAG 104964 || |||| || ||||| || ||||||||| | ||||| || | |||| ||||| Sbjct 1603 ATCACAAATTGAAACTGGAACTCCATACATGTTGTACAAGGATCACGCTAACAGCAAGAG 1544 Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024 || |||||||| | || |||||||||||||| | || || || | || | Sbjct 1543 CAACCAAAAGAACCTCGGAACCATCAAGAGTTCCAACTTGTGCTGTGAGATTATCGAGTA 1484 Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 || | |||||| ||||| || ||||| || || || |||| || | || || Sbjct 1483 CACCTCCCCAGATGAAGTAGCTGTTTGCAACCTTGCTTCCATATCTCTACCTAGATACGT 1424 Query 105085 GGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 105144 | | || | || || ||||| ||||| ||| ||||||| | |||| Sbjct 1423 G-----AAGGATGGTG-TTTTCGACTATGAGAAACTTCACAAAGTTACTTATCAAATCAC 1370 Query 105145 CAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAA 105201 || ||| | |||||| | |||||| | || || || || || ||| || || Sbjct 1369 CATTAACTTGAACAGAATCATTGATGGCAACTTCTATCCATGCGATGA---AGCCAAAAA 1313 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 || || ||||||||| | ||||| ||| ||||| |||| ||||| || |||| Sbjct 1312 CTCAAACATGAGACACAGACCAATCGGTATCGGTATTCAAGGTCTGGCTGATG 1260 >seq2801 Length=1577 Score = 122 bits (134), Expect = 1e-22 Identities = 185/256 (72%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCGTGTATTCAA-AAGAAAGCGG 94759 |||||| || ||||| |||||||| | |||| ||| || | | ||||| || | Sbjct 862 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA--TCCCAGTTGTAACTAAGAAGGCTG 805 Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 | ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || | Sbjct 804 AATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTT 748 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || | | ||||| ||||||||||| || ||||||||| | || | ||||| |||| Sbjct 747 TCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGA 688 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 94939 |||| || ||||||||||||||| |||||| || ||||| || || | ||||| || Sbjct 687 AGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTA 628 Query 94940 TCCACCAAGAGTTTGC 94955 | ||| || ||||| Sbjct 627 TGCACACTGACTTTGC 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583097756734120