Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2801 118 1e-21 seq5401 98.7 1e-15 >seq2801 Length=1577 Score = 118 bits (130), Expect = 1e-21 Identities = 345/525 (66%), Gaps = 10/525 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||| | ||| | | | |||||| || ||||| || ||||||||| ||| Sbjct 1149 TGTACAAGGACCAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGACCTCGCCACCGACG 1090 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||||||| | ||||| || ||||| || || |||||| ||||| |||| Sbjct 1089 TTAAGGATTGGGAGAGACTCAACGACAACGAGAGACACTTTATCAAGCACGTCCTTGCCT 1030 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 | ||||| || || ||||| || | || || | | | || || | | || Sbjct 1029 TTTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAGATTCTGTACTGAAA 970 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACT 59832 |||| || | || || || | ||||| | | || | | | ||| || |||| Sbjct 969 TCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGATGGAGAACATTCACT 910 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 | ||||| ||||| | | ||||| | | ||| || || | ||||||| | Sbjct 909 CAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACACGAGAAGGAGTTCC 850 Query 59893 TGTTCCGTGCCAT-AGAGACGTCCCCCGCAGTTA-AACAAAAA--GCAGAATGGGCCATG 59948 | ||| ||||| | || |||| |||| ||| || | || ||||||||||| Sbjct 849 TCTTCAAAGCCATCACTAACATCCC----AGTTGTAACTAAGAAGGCTGAATGGGCCATT 794 Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG-TGGA 60007 ||||||| || | || || || | | || || ||||| || ||| | || Sbjct 793 AAGTGGATTGGTGAGAGCGCTAGCTTCGCTGAGAGACTAATTGCTTTCGC-TGCTATCGA 735 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 || ||||||||||| || || ||||| | || |||||||| || |||||||||||||| Sbjct 734 GGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAAGCGTGGCCTCAT 675 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| || || | ||||| || ||||| ||||| | ||||| || Sbjct 674 GCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 630 >seq5401 Length=3445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 177/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 19415 GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 ||| |||| || |||||| | |||||||| | || || || || ||| |||| || || Sbjct 1977 GGTCTCGTACCCATGCTCAGAGTCTTCAATGAGACTGCTAGATATGTCGACCAAGGAGGT 1918 Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGAT 19534 ||||| | ||||| || ||||| || ||| | || ||||||||||| || ||| | ||| Sbjct 1917 GGCAAGAGAAAGGGTTCATTCGCTATTTACTTGGAACCATGGCACGCAGATGTCTTCGAT 1858 Query 19535 TTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGA--GATGCGCTGTCGCGACCTCTTCA 19592 ||||| |||| | ||| || ||| | ||||| | | || | ||| | || Sbjct 1857 TTCCTTTAACTAAGAAAGAATCACGGTAAAGAGGAACAAAGAGC--AAGAGACTTGTTTT 1800 Query 19593 CGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACC 19652 || | |||||||| || ||||||||| ||| || || |||| ||| ||| | Sbjct 1799 TCGCTCTCTGGATTCCAGATCTATTCATGAAGAGAGTCCAGGCTGACGGAGACTGGACAC 1740 Query 19653 TGATGTGCCCGCACGAA 19669 | | ||||| ||||| Sbjct 1739 TTTTCTGCCCCAACGAA 1723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548371466748720