Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2801 138 1e-27 >seq2801 Length=1577 Score = 138 bits (152), Expect = 1e-27 Identities = 363/552 (66%), Gaps = 4/552 (1%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| || | ||||| || || | || || ||||| || ||||||||| Sbjct 630 CCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTC 689 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| | |||||||| || |||||||||||| |||| | || || Sbjct 690 TTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAA 749 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC- 74947 || | || | | ||||| || | ||||| | ||||||||||| Sbjct 750 GCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCATTCAGCC 809 Query 74948 -TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGG 75006 | || ||| || | |||| || ||| |||| ||||||| ||||||| | | Sbjct 810 TTCTTAGTT--ACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTG 867 Query 75007 GATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGA 75066 | || ||| ||| |||| || | | |||||| ||||| || ||||| ||| | | Sbjct 868 GGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCA 927 Query 75067 ACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCA 75126 | ||| | | |||||| | || || |||| || || | || | | || || Sbjct 928 TCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCT 987 Query 75127 TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGA 75186 | ||| ||||| ||||||| ||||| ||||| |||||||| || || || |||| Sbjct 988 GGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTGA 1047 Query 75187 TAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAA 75246 ||||||| | ||| | ||| ||||| | ||||||||||| | ||| || | || | Sbjct 1048 TAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCGAGGTCGA 1107 Query 75247 TCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGT 75306 | ||||| ||||||||| | ||| | ||||||| ||| | ||| || Sbjct 1108 TTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTGTACATCTTCCAGATGTCGTTGT 1167 Query 75307 AATTGATTGGAA 75318 | |||||||||| Sbjct 1168 ACTTGATTGGAA 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547063032607400