Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq21020 96.9 2e-15 seq22269 89.7 3e-13 seq18786 89.7 3e-13 seq5463 86.0 4e-12 >seq21020 Length=1175 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || | Sbjct 901 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 842 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || |||||||||||||||||||||| || || | | ||||| || || | Sbjct 841 AAAGTTCT-GC-CGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTG 784 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||| || | ||| || | || ||||| || Sbjct 783 GAATACCTTCCTTGTCCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCG 725 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || |||||||| || |||||||| || |||| ||| Sbjct 724 ACGTCCAAAGTGATAGTCTTACCGGTCAAGGTTTTCACGAAGATCTACAT 675 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || || |||||||| || || |||||||| |||| | |||||| Sbjct 655 ACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTCA 596 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || | | |||||| || || || | || || || ||| | Sbjct 595 AGTTGCTTGCCGGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 536 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| |||||| | ||| |||||| ||| || || | ||| || || || Sbjct 535 ATC-TTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTT 477 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || ||||| Sbjct 476 TCCGGTAAGGGTCTTAACGAAGATTTGCAT 447 >seq22269 Length=1399 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 1105 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1046 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 1045 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 986 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 985 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 927 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 926 ATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 879 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | |||||||| ||||| || || || ||||| || |||||| Sbjct 877 CCACCTCTGAGTCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 818 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||||||||| || ||||| || || | | ||||| || || || Sbjct 817 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 758 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| |||| || || | ||| || ||| ||| || Sbjct 757 ATACCTTCCTTGTCTTGGATC-TTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGAC 699 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || || || || || ||||| Sbjct 698 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 651 >seq18786 Length=1170 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 295 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 354 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 355 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 414 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 415 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 473 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 474 ATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 521 >seq5463 Length=1496 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 1321 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1262 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 1261 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 1202 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 1201 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 1143 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 1142 ATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGAT-TGCAT 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314643820742579