Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21020 91.5 1e-13 seq14578 89.7 3e-13 >seq21020 Length=1175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | ||||||||||| || ||||| || || || |||||||| || ||||| | Sbjct 216 AAAATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCA 275 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | || || || |||||||| || | || || ||| Sbjct 276 TCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGAT 335 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || || || || ||||| ||||||||| | || | ||| ||| Sbjct 336 CAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTAC 395 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || ||||| || | || || || || || | ||||||| Sbjct 396 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 445 >seq14578 Length=3221 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 |||||||||||| | || || ||||| ||||| || | | |||| || || || Sbjct 917 TTCGTTAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGACCATT 858 Query 23680 GAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 ||| ||| || | |||||| || ||||| || | || || || ||||| | ||| Sbjct 857 GAAGAATTTAAGCTTAAAATTTAAGATAAAGAGGGCATTCCTCCTGACCAACAAAGATTA 798 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 |||||||| || | || | || |||| | | || || || || ||||| || ||| | Sbjct 797 ATATTTGCAGGTATGTAATTAGAGGACGGAAGGACATTGGGAGACTACAATATTTAAACA 738 Query 23800 GAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||| | ||||||||| | || | |||| ||| Sbjct 737 GAGTCAACACTCCATTTAGTTCTTAGACTCAGAGGTGGA 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337917475800404