Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18508 230 3e-55 seq2801 127 3e-24 >seq18508 Length=3287 Score = 230 bits (254), Expect = 3e-55 Identities = 508/756 (67%), Gaps = 18/756 (2%) Strand=Plus/Plus Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 || ||||||||| ||||| | || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 1334 AAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATT 1393 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 | ||||||| |||| |||||| ||||| | |||||||||||||| ||||| || || Sbjct 1394 TCTAGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAAT 1453 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCA-AATCTTCCAT---CTATAACA--AA 77668 | || ||||| | || || | ||||| | |||| | || ||||| || Sbjct 1454 TCTCTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAA 1513 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || ||||| ||||| ||||||||||| || || || |||| | ||| | ||| Sbjct 1514 TCTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTC 1573 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 | ||||| || || || ||| || || || ||||| ||||||| | |||| || Sbjct 1574 GACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTT 1633 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | ||||||| | || || ||||| ||| | ||||| || || || | || || || || Sbjct 1634 TCTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTAT 1693 Query 77849 AATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG-CCTCTCTC-----T 77902 || | ||||| |||||| | | | || ||| || ||||| | | Sbjct 1694 GATTTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTG---CGACCTCTACCAGTGGT 1747 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||| | | || || ||||| || || ||||| | | | ||| ||||| Sbjct 1748 TTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCA 1807 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||||||| ||||| | | ||| || ||| | | | ||||| | |||| || ||||| Sbjct 1808 TTCATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATC 1867 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || |||| ||||| || || |||| | ||||| ||||| || || |||||| Sbjct 1868 TGGAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTT 1927 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | | || | || || || ||||||| ||||||||||| | ||| | || | | | Sbjct 1928 TCTGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 1987 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 ||| || ||| ||| || | ||| | ||||| ||||||| ||| |||| | || Sbjct 1988 TCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAA 2047 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 ||||||||| | || || || ||| ||||| || Sbjct 2048 CATTGGAATCAATCCATTTGAATATCCGTTTGTACC 2083 >seq2801 Length=1577 Score = 127 bits (140), Expect = 3e-24 Identities = 399/613 (65%), Gaps = 4/613 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||| || | |||||| ||||| ||| | || || || || |||||| Sbjct 609 CAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 668 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || ||||| || || ||||| || |||| ||| ||||| || ||||| Sbjct 669 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAG 728 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 ||||| || | || || || || | |||||||| || | || || | ||| Sbjct 729 ATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATC 788 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAA 48379 ||| ||||| ||||||||||| ||||| || || ||| | || || || || Sbjct 789 CACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAA 847 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| || | || || | || | | | || || || | | || | || Sbjct 848 GAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTC 907 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||||| || || || ||| || || || || ||||| | ||||||| | || Sbjct 908 TGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTG 967 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 | || ||||| |||| | || | ||||| || || ||||| || ||||| || Sbjct 968 GATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAA 1027 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 ||| || | || || || ||||| | | | |||||| | ||| | | ||| || || Sbjct 1028 AAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTT 1087 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC-TCTGCTTTTTTAT 48678 | || | | | || | ||| |||| ||||| || | ||| |||| | || | Sbjct 1088 AACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTG-T 1146 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| ||||| || || |||| | |||||| | ||||||||||| ||||| || | | Sbjct 1147 ACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATCTT 1206 Query 48739 CAAGGATAGGTTC 48751 | || | ||| || Sbjct 1207 CGAGAAGAGGCTC 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694474614020320