Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5401 226 4e-54 seq18508 196 7e-45 >seq5401 Length=3445 Score = 226 bits (250), Expect = 4e-54 Identities = 610/926 (66%), Gaps = 8/926 (1%) Strand=Plus/Plus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 |||| ||| || || || || ||||| ||||| |||| | || || | || ||| Sbjct 1436 AGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGATAATC 1495 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||| | || || |||||| ||||| || || | |||||||||||| ||||| Sbjct 1496 TCACAGCACAAGTTGGAACTCTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTA 1555 Query 76391 -CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 | ||| ||||| || | | | ||||||||||||||||| |||||||| ||||| | Sbjct 1556 GCGTGA-TCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATAATGGC 1614 Query 76450 TTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCATATTGT 76507 || ||| | | |||||| ||| | ||| | | ||| | || ||||| | Sbjct 1615 TTCCCATAGTTTTTGAGCTTTCATTGTT--TTTCTGCCAATTCCTTATTGCTCATACTTA 1672 Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| | ||| ||||| | || ||| || | || ||| || || Sbjct 1673 GTATAGAGAGCTTCGAATTCCTAGCCATGAACTTCGAAGAGGCCCTTGGCTTCGTTGGGG 1732 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 || | | || ||| || || || ||| || | ||||| || ||||| || ||||| Sbjct 1733 CAGAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAATCCAG 1792 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 ||||| | ||| | |||| | ||| |||| || || || ||||||| | || | Sbjct 1793 AGAGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTAA 1852 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 ||||| || | | ||| | ||||||||||| | || || || | |||| || Sbjct 1853 AGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCTTTCTC 1912 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || |||||| || || | |||||| ||||| | ||| | ||||| | ||| || | Sbjct 1913 TTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGGGTACG 1972 Query 76808 ATGCCGTTAGATGT-ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 | || ||| ||| |||||| || || || ||||| ||| || | || || Sbjct 1973 AGACCATTAC-TGTGACCATTAGTGCCCTTGATGTAACTGCCAGTGGCTCTGATGTTGTG 2031 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || || || || | || || || ||| || || | || | || | || || Sbjct 2032 AACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAAGGCGATGTTCTTAAGGGTATC 2091 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 |||||| || | || || ||| |||| |||| || || || || ||||||| | Sbjct 2092 ATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTTGACATTTATGG 2151 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG 77046 | | ||| |||||||| ||||| ||||||| ||||||||||||||| | ||| | Sbjct 2152 CTTAGGAGTACCTGCATTGAACAAAGTAGGAGTGGCATGAGTGAACCATCTGTCACTCAT 2211 Query 77047 TAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACG 77106 || ||||| |||||||| ||| || |||||| || || || ||||||| || | Sbjct 2212 GAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTTTTGTGGATACCTACAGACACTCT 2271 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||||||| || || |||| || || |||| ||| | || | ||||| ||| | Sbjct 2272 CATCAACATGTGTTGTGGTCTCTCAACGATCTTTGAATTGACCTTTAGTAAGTAGGATCT 2331 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGT 77192 ||||| || || ||||| ||||||| Sbjct 2332 CTCCAAGGTCTTGAAACCGAAATAGT 2357 >seq18508 Length=3287 Score = 196 bits (216), Expect = 7e-45 Identities = 482/726 (66%), Gaps = 20/726 (3%) Strand=Plus/Plus Query 76094 GCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCA 76153 |||||||| | ||| | || ||||| ||||| ||||| ||||| ||| ||| || | Sbjct 1338 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1397 Query 76154 GCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 ||||| |||| ||| || ||||| |||||||||||||||| ||| |||| | | | || Sbjct 1398 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGA-TTCTTAGTAATTCT 1456 Query 76214 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAATT------TTCCATCTATCACAAACAT 76266 || ||||| | || || | ||||| ||| || | | || ||| || | Sbjct 1457 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1516 Query 76267 ATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTAT 76326 ||| | ||| ||||| ||||||||||| || || || |||| | | ||| | ||| | Sbjct 1517 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 1576 Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||||| ||||| || ||| || ||| || || |||||||||| | |||| ||| | Sbjct 1577 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 1636 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || | || || ||||| | | | ||||| ||||| || | || || || || || Sbjct 1637 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1696 Query 76447 AGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCG-CTTCTCTC-----TTTC 76500 | ||||| |||||| | | | || ||| || | ||| | |||| Sbjct 1697 TTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTG---CGACCTCTACCAGTGGTTTC 1750 Query 76501 ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| | | || | ||||| || || ||||| | | | || || ||||| Sbjct 1751 ATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTC 1810 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 ||| |||||||| | | ||| || ||| | | | ||| | | |||| || ||||| || Sbjct 1811 ATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGG 1870 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 |||| ||||| || || |||| | |||| ||||| || || ||||||| | Sbjct 1871 AGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1930 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 || | ||||| || ||||||| ||||||||||| | ||| | || | | | || Sbjct 1931 GAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 1990 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 | || ||| ||| || | ||| | ||||| || |||| ||| |||| | ||||| Sbjct 1991 CTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACAT 2050 Query 76801 TGGAAT 76806 |||||| Sbjct 2051 TGGAAT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712735108100160