Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17347 107 4e-18 seq787 107 4e-18 seq19424 86.0 1e-11 seq17552 86.0 1e-11 seq2793 86.0 1e-11 seq1529 86.0 1e-11 >seq17347 Length=120859 Score = 107 bits (118), Expect = 4e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 46270 GCTAGCCCGTCTAGCTCAGT-GGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTC 46212 Query 165766 GAGCCCCACGATGGGC 165781 || |||| || ||||| Sbjct 46211 GATCCCCTCGGTGGGC 46196 >seq787 Length=121765 Score = 107 bits (118), Expect = 4e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 95461 GCTAGCCCGTCTAGCTCAGT-GGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTC 95403 Query 165766 GAGCCCCACGATGGGC 165781 || |||| || ||||| Sbjct 95402 GATCCCCTCGGTGGGC 95387 >seq19424 Length=10835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 9002 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 9061 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 9062 CCCTCGGTGGGC 9073 >seq17552 Length=67054 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 9133 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 9192 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 9193 CCCTCGGTGGGC 9204 >seq2793 Length=42345 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 20460 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 20401 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 20400 CCCTCGGTGGGC 20389 >seq1529 Length=86288 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 84779 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 84838 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 84839 CCCTCGGTGGGC 84850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057475407323600