Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq19631 138 8e-28 seq4898 138 8e-28 >seq19631 Length=63550 Score = 138 bits (152), Expect = 8e-28 Identities = 290/423 (69%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 |||| |||| | ||| | |||||||| |||| ||| || |||||||| | || Sbjct 34594 TCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT--CTCT 34651 Query 101747 AGATTAGTGACA--TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATG 101804 | | ||| || |||| |||||| ||||| | ||||| || |||||||| || | Sbjct 34652 TCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAG 34711 Query 101805 GCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCA- 101863 | | || | ||||||||| ||||||||||||| ||| |||||||||||||||||| Sbjct 34712 GAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAG 34771 Query 101864 CAG--ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 ||| |||||||||| | ||| | || || || || | |||| || || || | Sbjct 34772 CAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAG 34831 Query 101922 AAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGT-ATCA 101980 | | |||||||||| ||| | || ||||| ||| || ||||| || | | || | Sbjct 34832 CAGCGTTCCAAGCACTCATCACAATTCTTCTGCTTGT-TGGATTGTTCTTCAACTGATTA 34890 Query 101981 ATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCG-CGCCCAACACCTTTATA 102039 || | | |||| ||||| ||||| |||| | |||||| || | | || ||| Sbjct 34891 ATGACGTCAGCCAATTAGTCAAATCCTTTTCCTGTGTAATCGTCGTGC-ATTGTTTCATA 34949 Query 102040 TTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCT 102099 | ||||| || || ||||| | || ||||| || || || ||||| | || ||||| Sbjct 34950 AGCAGCTCCAAAGTGTCTCCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCT 35009 Query 102100 GTC 102102 || Sbjct 35010 ATC 35012 >seq4898 Length=10221 Score = 138 bits (152), Expect = 8e-28 Identities = 290/423 (69%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 |||| |||| | ||| | |||||||| |||| ||| || |||||||| | || Sbjct 3834 TCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT--CTCT 3891 Query 101747 AGATTAGTGACA--TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATG 101804 | | ||| || |||| |||||| ||||| | ||||| || |||||||| || | Sbjct 3892 TCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAG 3951 Query 101805 GCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCA- 101863 | | || | ||||||||| ||||||||||||| ||| |||||||||||||||||| Sbjct 3952 GAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAG 4011 Query 101864 CAG--ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 ||| |||||||||| | ||| | || || || || | |||| || || || | Sbjct 4012 CAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAG 4071 Query 101922 AAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGT-ATCA 101980 | | |||||||||| ||| | || ||||| ||| || ||||| || | | || | Sbjct 4072 CAGCGTTCCAAGCACTCATCACAATTCTTCTGCTTGT-TGGATTGTTCTTCAACTGATTA 4130 Query 101981 ATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCG-CGCCCAACACCTTTATA 102039 || | | |||| ||||| ||||| |||| | |||||| || | | || ||| Sbjct 4131 ATGACGTCAGCCAATTAGTCAAATCCTTTTCCTGTGTAATCGTCGTGC-ATTGTTTCATA 4189 Query 102040 TTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCT 102099 | ||||| || || ||||| | || ||||| || || || ||||| | || ||||| Sbjct 4190 AGCAGCTCCAAAGTGTCTCCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCT 4249 Query 102100 GTC 102102 || Sbjct 4250 ATC 4252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361137961295720