Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1748 187 3e-42 seq17288 140 4e-28 >seq1748 Length=94692 Score = 187 bits (206), Expect = 3e-42 Identities = 732/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Minus Query 53525 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 53583 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 40401 Query 53584 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTAC 53643 |||||| |||| |||||| ||||| |||||||||||||||| || || | |||| Sbjct 40400 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 40341 Query 53644 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC------CATCTATTACAAACAT 53697 ||| ||| | | | || | ||||| ||| | | | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || || |||||||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 || || ||||| || ||||| || | || |||||||| || | || || ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 53878 CGCTTTCCAGACGACA-CGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGT 53933 ||||| | || | |||||| | || ||| | |||| |||| | Sbjct 40100 TTAACCCCAGA-GCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCAT 40045 Query 53934 A-TAG-TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 53991 | | | |||| | || |||||||| || ||||| | | | ||| || ||||| Sbjct 40044 ACTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTC 39987 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAG 54050 || |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| | Sbjct 39986 ATTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTG 39928 Query 54051 GAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 || |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 39927 GAGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTT 39869 Query 54110 TTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 | || | ||||| | | || ||||||| ||||| ||||| | || | | | | | Sbjct 39868 CTGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 39810 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 ||| | ||| || || | ||| | |||||| ||||||| ||| |||| | || Sbjct 39809 TCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAA 39750 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||||||||| | ||||| || || || || || ||| ||| || || | Sbjct 39749 CATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCT 39690 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 | || | ||| | || || || || || || ||||| | || | ||| Sbjct 39689 TACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTT 39630 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTA 54406 ||| || ||| | || || || || || || | ||| || ||| || ||| | Sbjct 39629 TAAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAA 39575 Query 54407 GA---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 || ||| | ||| | ||||| | ||||| | || |||| || || |||| Sbjct 39574 GAACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAA 39517 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 |||| || | | | || ||| ||||||| ||||| || | || || ||||| Sbjct 39516 ACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAA 39457 Query 54522 TTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 | || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| Sbjct 39456 TACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 39399 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 ||| || | ||| | | ||||||| ||| | ||||||||||||| Sbjct 39398 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 140 bits (154), Expect = 4e-28 Identities = 385/582 (66%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 116849 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 | || || ||||| ||||| || | | | ||||| ||| |||||||| |||| Sbjct 116848 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 116789 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 116788 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 116729 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | | || | | || || || | | || | || || |||||||| | Sbjct 116728 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 116669 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAA 24507 | || |||||| || || |||||||| | || || | || || | ||| |||| | Sbjct 116668 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 116609 Query 24508 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 116608 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 116549 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 24626 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 116548 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 24685 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||| | || | ||||||| ||||||||||| ||||| || Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593530718505600