Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17288 172 6e-38 seq18779 127 2e-24 seq2143 127 2e-24 seq17194 95.1 1e-14 >seq17288 Length=143976 Score = 172 bits (190), Expect = 6e-38 Identities = 390/580 (67%), Gaps = 11/580 (2%) Strand=Plus/Plus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGA-GGCGTCGTTCTGGACCGTCGAGGAGGTGGA 116691 ||||| ||| |||||||| | | || ||| | ||||||||| ||||| | || Sbjct 116428 GACATCTGGAAGATGTACAAGGAC-CAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGA 116486 Query 116692 CCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||| ||| ||| | || |||||| | | |||||||||||| | || || ||||| Sbjct 116487 CCTCGCCACCGACGTTAAGGATTGGGAGAGACTCAACGACAACGAGAGACACTTTATCAA 116546 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||| || ||||||||||| ||| ||||| |||||||||||||| || | | || | Sbjct 116547 GCACGTCCTTGCCTTTTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAG 116606 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || | || || | || || || || ||||| ||||| || || || Sbjct 116607 ATTCTGTACTGAAATCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGAT 116666 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG---CTCTTC 116928 ||||||| | ||||| || | || || ||||||||||| | | | | | Sbjct 116667 GGAGAACATTCACTCAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACA 116726 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||| || || ||| | || || |||||| | || || || | ||||||| Sbjct 116727 CGAGAAGGAGTTCC---TCTTCAAAGCCATCACTAACATCCCAGTTGTAACTAAGAAGGC 116783 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | ||||| | | |||| || ||||| ||| | || | || Sbjct 116784 TGAATGGGCCATTAAGTGGATTG--GTGAGAG-CGCTAGCTTCGCTGAGAGACTAATTGC 116840 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||||| || |||||||| ||||||| || || ||| | | || || ||||| || Sbjct 116841 TTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAA 116900 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| || |||||||| || || ||||| || Sbjct 116901 GAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 116960 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||| |||||||| || | || | |||||| ||| Sbjct 116961 TATGCACACTGACTTTGCTTGCCTTCTCTACAAGCACTTG 117000 >seq18779 Length=42783 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 12452 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 12511 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 12512 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 12571 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||||| | ||||| Sbjct 12572 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 12631 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 12632 CAACATCCAGAAGGA 12646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| |||| || || |||| | Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 13198 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 13199 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 13257 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 13258 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 13317 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 13318 ACATCCAAAAGGAGTCAACTCTCCA 13342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| | |||||||| | | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || ||||| | || || Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||| | || || || || || || || | | ||||| | ||||||||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCA 13114 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || || |||| | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 12742 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | || || || || || ||| | || | Sbjct 12743 AGACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATC 12801 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||| | || || || || || || || | | ||||| | ||||||| Sbjct 12802 AACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACA 12861 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 12862 ACATCCAAAAGGAGTCAACCCTTCA 12886 >seq2143 Length=26640 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 6729 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 6670 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 6669 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 6610 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||||| | ||||| Sbjct 6609 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 6550 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 6549 CAACATCCAGAAGGA 6535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| |||| || || |||| | Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGA-GCCATC 5953 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 5952 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 5894 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 5893 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 5834 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 5833 ACATCCAAAAGGAGTCAACTCTCCA 5809 >seq17194 Length=120762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||||||||| ||||| | || || || ||||||| | || Sbjct 44712 TCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCG 44653 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || |||||| |||| |||| | |||||| |||||||||||||||||||||| | | Sbjct 44652 CTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAA 44593 Query 40886 CGCTGCA 40892 | || || Sbjct 44592 CCCTTCA 44586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515053557027200