Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq19631 134 1e-26 seq4898 134 1e-26 >seq19631 Length=63550 Score = 134 bits (148), Expect = 1e-26 Identities = 312/465 (67%), Gaps = 9/465 (2%) Strand=Plus/Plus Query 97008 TGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATA 97067 ||||||||| || || | |||| | |||| || | |||| ||||| ||| Sbjct 34551 TGGGAAAGGATATGGGTATCTCTTAAGTTACTCTTGAAGTGGTTCAACATGATTTTTATA 34610 Query 97068 AATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTG-ACATGGG 97126 | |||||||| ||||| ||||| || ||||| | |||| | || || | Sbjct 34611 TACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCT-TCAATCCGCACACTTGTG 34669 Query 97127 CGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATAT 97186 | | ||| || ||||| | ||||| || |||||||| ||||| | || || ||||||| Sbjct 34670 CAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACCAAGACCCATAT 34729 Query 97187 CAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT---CACACACATAAAACTGAC 97243 || ||||||||||| | || |||||||||||||||| || | |||||||| | | Sbjct 34730 CACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGAAACATAAAATTAAG 34789 Query 97244 TCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACA 97303 || | || ||||| || | ||||| ||| || ||| | |||||||||| || Sbjct 34790 CTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAGCAGCGTTCCAAGCACTCA 34849 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTA--TCTGCTTTAATTG 97361 ||| |||||||| ||||| || | | | |||||| | || || |||| Sbjct 34850 TCACAATTCTTCTGCTTGTTGGATTGTTCTTCAACTGATTAATGACGTCAGC--CAATTA 34907 Query 97362 ATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCT 97421 |||| |||| ||| |||| || | | || ||| | |||||||| || || Sbjct 34908 GTCAAATCCTTTTCCTGTGTAATCGTCGTGCATTGTTTCATAAGCAGCTCCAAAGTGTCT 34967 Query 97422 CCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 ||||| ||| ||||| || || || || || | ||||||||||| Sbjct 34968 CCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCTATC 35012 >seq4898 Length=10221 Score = 134 bits (148), Expect = 1e-26 Identities = 312/465 (67%), Gaps = 9/465 (2%) Strand=Plus/Plus Query 97008 TGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATA 97067 ||||||||| || || | |||| | |||| || | |||| ||||| ||| Sbjct 3791 TGGGAAAGGATATGGGTATCTCTTAAGTTACTCTTGAAGTGGTTCAACATGATTTTTATA 3850 Query 97068 AATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTG-ACATGGG 97126 | |||||||| ||||| ||||| || ||||| | |||| | || || | Sbjct 3851 TACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCT-TCAATCCGCACACTTGTG 3909 Query 97127 CGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATAT 97186 | | ||| || ||||| | ||||| || |||||||| ||||| | || || ||||||| Sbjct 3910 CAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACCAAGACCCATAT 3969 Query 97187 CAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT---CACACACATAAAACTGAC 97243 || ||||||||||| | || |||||||||||||||| || | |||||||| | | Sbjct 3970 CACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGAAACATAAAATTAAG 4029 Query 97244 TCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACA 97303 || | || ||||| || | ||||| ||| || ||| | |||||||||| || Sbjct 4030 CTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAGCAGCGTTCCAAGCACTCA 4089 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTA--TCTGCTTTAATTG 97361 ||| |||||||| ||||| || | | | |||||| | || || |||| Sbjct 4090 TCACAATTCTTCTGCTTGTTGGATTGTTCTTCAACTGATTAATGACGTCAGC--CAATTA 4147 Query 97362 ATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCT 97421 |||| |||| ||| |||| || | | || ||| | |||||||| || || Sbjct 4148 GTCAAATCCTTTTCCTGTGTAATCGTCGTGCATTGTTTCATAAGCAGCTCCAAAGTGTCT 4207 Query 97422 CCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 ||||| ||| ||||| || || || || || | ||||||||||| Sbjct 4208 CCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCTATC 4252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346675296220400