Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18779 98.7 1e-15 seq10467 96.9 5e-15 seq6376 96.9 5e-15 seq5238 96.9 5e-15 seq1293 96.9 5e-15 seq20086 95.1 2e-14 seq2143 91.5 2e-13 >seq18779 Length=42783 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 12743 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || |||||||| |||||||| || || |||||| Sbjct 12744 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 12803 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 12804 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 12862 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 12863 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 12913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || |||||||| ||||| |||||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 13090 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 13091 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 13141 >seq10467 Length=17661 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 3695 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 3754 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 3755 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 3814 Query 124743 TTGGTTTT 124750 ||||| || Sbjct 3815 TTGGTCTT 3822 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 13959 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 13900 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 13899 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 13840 Query 124743 TTGGTTTT 124750 ||||| || Sbjct 13839 TTGGTCTT 13832 >seq6376 Length=13110 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 12093 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 12152 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 12153 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 12212 Query 124743 TTGGTTTT 124750 ||||| || Sbjct 12213 TTGGTCTT 12220 >seq5238 Length=45295 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 21904 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 21963 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 21964 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 22023 Query 124743 TTGGTTTT 124750 ||||| || Sbjct 22024 TTGGTCTT 22031 >seq1293 Length=7053 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 6382 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 6441 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 6442 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 6501 Query 124743 TTGGTTTT 124750 ||||| || Sbjct 6502 TTGGTCTT 6509 >seq20086 Length=32257 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 22056 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 22115 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 22116 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 22175 Query 124743 TTGGT 124747 ||||| Sbjct 22176 TTGGT 22180 >seq2143 Length=26640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || |||||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 6154 AAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTTGCTGGAAAG 6095 Query 124683 CAATTAGAGGATAGTCGAA-CATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| | || ||| | ||| | |||| || || || || ||||| || ||||| | || Sbjct 6094 CAACTTGAAGATGGAAGAACCCTTAG-TGACTACAACATCCAAAAGGAGTCAACCCTTCA 6036 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | | || |||||||||| Sbjct 6035 CTTGGTCCTCAGATTGAGAGGTGGTAT 6009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755213120896000