Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq19631 113 4e-20 seq4898 113 4e-20 >seq19631 Length=63550 Score = 113 bits (124), Expect = 4e-20 Identities = 234/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 ||||| ||||| | || || || ||||| || |||||||||| |||||||||| |||| Sbjct 35005 AAGAGTGGGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATG 34946 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || |||| ||| ||||| | || |||| | || |||||| Sbjct 34945 AAACAATGCACGACGATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATC 34886 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | || | || |||| |||||||||| | | | || ||||||||| ||| Sbjct 34885 AGTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGAT- 34827 Query 20393 TGCCTTTAA----TGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| || ||||| | ||||| || || || || ||||||| ||| || | Sbjct 34826 ---CTTAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCT 34770 Query 20449 AATGAATTG---TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 ||| | | || || |||||||||||| |||| ||||||||| || ||| ||||| Sbjct 34769 GATGGAAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCT 34710 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||||| ||||| |||||| | || | || | ||| ||||||| || Sbjct 34709 TTCAACATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGT 34663 >seq4898 Length=10221 Score = 113 bits (124), Expect = 4e-20 Identities = 234/347 (67%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 ||||| ||||| | || || || ||||| || |||||||||| |||||||||| |||| Sbjct 4245 AAGAGTGGGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATG 4186 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || |||| ||| ||||| | || |||| | || |||||| Sbjct 4185 AAACAATGCACGACGATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATC 4126 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | || | || |||| |||||||||| | | | || ||||||||| ||| Sbjct 4125 AGTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGAT- 4067 Query 20393 TGCCTTTAA----TGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| || ||||| | ||||| || || || || ||||||| ||| || | Sbjct 4066 ---CTTAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCT 4010 Query 20449 AATGAATTG---TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 ||| | | || || |||||||||||| |||| ||||||||| || ||| ||||| Sbjct 4009 GATGGAAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCT 3950 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||||| ||||| |||||| | || | || | ||| ||||||| || Sbjct 3949 TTCAACATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGT 3903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399058870785400