Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq17424 102 1e-16 >seq17424 Length=159384 Score = 102 bits (112), Expect = 1e-16 Identities = 145/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 73908 ATTGTTCATAGATATCTTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTA 73967 ||||| | ||| || | |||||||||| || || || | || || ||||||| |||| Sbjct 93007 ATTGTAGAGAGACATTTAGAAAATGGAGACGTAGTATTGTTCAACAGGCAACCTAGTTTA 93066 Query 73968 CATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTT 74027 |||| || ||||| ||||||| | ||| | | ||||| || ||| || | |||| Sbjct 93067 CATAGAGTCTCAATTATGGCTCATAGAGCAAGAGTTATGCCATCAAGAACTTTAAGATTT 93126 Query 74028 AATCT-TGCAT--GCACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGCT 74084 || ||| | | ||| || |||||||||||||||||||| |||||||||||| Sbjct 93127 AACGAATGCGTTTGTACT---CCTTATAATGCAGATTTTGATGGTGATGAAATGAATATA 93183 Query 74085 CATGCGCCTCAATCAGAAGAA 74105 ||| ||| |||| |||||| Sbjct 93184 CATTTACCTTAATCTGAAGAA 93204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679595839670400