Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq18779 104 2e-17 seq2143 104 2e-17 seq20086 87.8 1e-12 seq10467 87.8 1e-12 seq6376 87.8 1e-12 seq5238 87.8 1e-12 seq1293 87.8 1e-12 seq17194 82.4 6e-11 >seq18779 Length=42783 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| |||||| |||||||| || || ||||||||||| Sbjct 12682 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 12623 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | ||| ||||| || |||| |||||||||||||| || Sbjct 12622 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 12563 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | |||||| | | | | |||||| |||||| Sbjct 12562 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 12503 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | |||||| | ||||| || | || || || || |||||||| |||| Sbjct 12502 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 12451 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || ||||| || ||||| ||||||||||||| || ||| | Sbjct 13357 AGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTG 13298 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | ||| || || || ||||||||||||||||||| || | |||||| Sbjct 13297 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 13238 Query 18228 TTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || | | | ||| ||| || | | ||| ||||| ||||| || | || Sbjct 13237 TTGTC--CTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGG 13180 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | || ||||| | || || || || |||||||| Sbjct 13179 TGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| |||||| ||||| || ||||| ||||||||||| | ||| | | Sbjct 12899 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 12840 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||| || || ||| | || |||||||||||||| ||| | |||||||| Sbjct 12839 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 12780 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| || | |||||| | | ||| |||||| ||||| |||| ||||| Sbjct 12779 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGAT 12720 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || || || | || || || || |||||||| Sbjct 12719 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| |||||| ||||| || ||||| ||||||||||| | ||| | | Sbjct 13127 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 13068 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||| || || ||| | || |||||||||||||| || | |||||||| Sbjct 13067 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 13008 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || || | | |||||| | ||| || || |||||| || | |||||| Sbjct 13007 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 12948 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || ||||| | || || || || |||||||| Sbjct 12947 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq2143 Length=26640 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| |||||| |||||||| || || ||||||||||| Sbjct 6499 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 6558 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | ||| ||||| || |||| |||||||||||||| || Sbjct 6559 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 6618 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | |||||| | | | | |||||| |||||| Sbjct 6619 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 6678 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | |||||| | ||||| || | || || || || |||||||| |||| Sbjct 6679 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 6730 Score = 100 bits (110), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || ||||| || ||||| ||||||||||||| || ||| | Sbjct 5794 AGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTG 5853 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | ||| || || || ||||||||||||||||||| || | |||||| Sbjct 5854 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 5913 Query 18228 TTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || | | | ||| ||| || | | ||| ||||| ||||| || | || Sbjct 5914 TTGTC--CTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA-GG 5970 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | || ||||| | || || || || |||||||| Sbjct 5971 TGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| |||||| ||||| || ||||| ||||||||||| | ||| | | Sbjct 6023 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 6082 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||| || || ||| | || |||||||||||||| ||| | |||||||| Sbjct 6083 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 6142 Query 18230 ATC 18232 ||| Sbjct 6143 ATC 6145 >seq20086 Length=32257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 22061 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 22060 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 22001 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 22000 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21968 >seq10467 Length=17661 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 3819 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 3760 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 3759 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 3700 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 3699 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 3640 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 3639 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 3607 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 13835 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 13894 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 13895 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 13954 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 13955 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 14014 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 14015 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 14047 >seq6376 Length=13110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 12217 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 12158 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 12157 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 12098 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 12097 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 12038 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 12037 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 12005 >seq5238 Length=45295 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 22028 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 21969 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 21968 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 21909 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 21908 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 21849 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 21848 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21816 >seq1293 Length=7053 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || |||||||||||||| |||||||| || | || ||| | | |||||| Sbjct 6506 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 6447 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || | || || ||| |||| ||||| |||||||| ||| | ||||| || || | Sbjct 6446 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 6387 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | || ||| ||||| |||| || || | || Sbjct 6386 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 6327 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || || || || | ||||||| Sbjct 6326 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 6294 >seq17194 Length=120762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || || || || ||||| |||||||||||| || ||| | Sbjct 43834 AGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTG 43893 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | |||||| || || |||| |||||||||||||| || | |||||| Sbjct 43894 CCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCC 43953 Query 18228 TTATC 18232 || || Sbjct 43954 TTGTC 43958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379225089881400