Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18779 127 2e-24 seq2143 127 2e-24 seq17194 84.2 2e-11 >seq18779 Length=42783 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||||||||| ||||| ||||| || |||||||| || ||||| | |||||||| || Sbjct 12452 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 12511 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| ||||| | || ||||||||||| | || ||||| Sbjct 12512 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 12571 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | || || ||||||||||| || | |||||| | || | || || || Sbjct 12572 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 12631 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || ||||| |||| || ||||| || || |||| Sbjct 12632 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGTA 12684 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| ||||| || || Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 13199 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || |||||||||||| | || ||||| || Sbjct 13200 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 13259 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| || || | |||||| | || || ||| || ||| Sbjct 13260 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 13319 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 || ||||| || || ||||| || |||| || ||||| || || ||| || Sbjct 13320 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTTGA 13370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| | ||||| || || || Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | ||||||||||| | || ||||| || Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGTATCCCACCCGATCA 13030 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || || ||||| || || | ||||| | || | || || || || Sbjct 13031 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 13090 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || || ||||| |||| || ||| |||| || |||| Sbjct 13091 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTA 13140 >seq2143 Length=26640 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||||||||| ||||| ||||| || |||||||| || ||||| | |||||||| || Sbjct 6729 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 6670 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| ||||| | || ||||||||||| | || ||||| Sbjct 6669 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 6610 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | || || ||||||||||| || | |||||| | || | || || || Sbjct 6609 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 6550 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || ||||| |||| || ||||| || || |||| Sbjct 6549 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGTA 6497 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| ||||| || || Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGAGCCATCA 5952 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || |||||||||||| | || ||||| || Sbjct 5951 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 5892 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| || || | |||||| | || || ||| || ||| Sbjct 5891 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 5832 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 || ||||| || || ||||| || |||| || ||||| || || ||| || Sbjct 5831 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTTGA 5781 >seq17194 Length=120762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || ||||| || || | || || ||||| || ||||| | || Sbjct 43959 GGACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAACAACTTGA 43900 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| | ||| ||||||| || ||||| ||||| || || ||||| || |||| || Sbjct 43899 AGACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTCCT 43840 Query 31405 TAGACTGAGGGGCGGT 31420 ||||| || || ||| Sbjct 43839 CAGACTTAGAGGTGGT 43824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445623086102400