Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq19631 145 2e-29 seq4898 145 2e-29 >seq19631 Length=63550 Score = 145 bits (160), Expect = 2e-29 Identities = 321/475 (68%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 35183 TTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAG 35242 |||||| |||||||| | |||| || || | | | ||| |||||||||||||| Sbjct 35210 TTTGGATATCAAATGAGATATGATCTT---GAAGAAAGTTTCCCAATTCTCACTACCAAG 35154 Query 35243 AAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGAC 35302 | |||||||||||||||| | || ||||| ||||| | | |||| ||||| | Sbjct 35153 GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTTGGTTTGTTAAGGGCGATACAAAT 35094 Query 35303 GCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTT 35362 ||||| | || ||| | || ||||| || ||| ||| ||||| || | | || Sbjct 35093 GCCAAGAACTTAGCCGACAAAAAGATCAGAATTTGGGACGGTAATGCCTCAAGATAGTTC 35034 Query 35363 TTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTC 35422 | ||| || || || | ||||||| |||| | ||| | || || || || || ||| Sbjct 35033 CTTGACTCTATCGGCTTGAAAGATAGAGAAGAGTGGGATCTCGGGCCAGTCTATGGGTTC 34974 Query 35423 CAATGGCGTCATTTTGGTGCTGAATATGATAC-CTGTTCTTCCGATTATACTGGAAAGGG 35481 ||||| | || ||||| |||| ||||| || || | |||||| || ||||| || Sbjct 34973 TAATGGAGACACTTTGGAGCTGCTTATGAAACAATGCAC-GACGATTACACAGGAAAAGG 34915 Query 35482 TATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGA 35540 |||| ||||||| | | | || ||| |||| |||||| ||||| | Sbjct 34914 ATTTGACTAATTGGCTGACGTCATTAATCAGTTGA-AGAACAATCCAACAAGCAGAAGAA 34856 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | | |||| || ||||| || |||||| | |||||||||||||| ||||||| Sbjct 34855 TTGTGATGAGTGCTTGGAACGCTGCTGATCTTAAAAACATGGCTCTTCCTCCCTGCCACA 34796 Query 35601 TGACTGCTCAATTTTATGT---GGCTAATGGAGAATTGTCGTGCCAGTTGTATCA 35652 | ||| |||||||||| ||| ||||| | | || ||||| ||||||| Sbjct 34795 TTTTAGCTTAATTTTATGTTTCTGCTGATGGAAAGCTTTCCTGCCAAATGTATCA 34741 >seq4898 Length=10221 Score = 145 bits (160), Expect = 2e-29 Identities = 321/475 (68%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 35183 TTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAG 35242 |||||| |||||||| | |||| || || | | | ||| |||||||||||||| Sbjct 4450 TTTGGATATCAAATGAGATATGATCTT---GAAGAAAGTTTCCCAATTCTCACTACCAAG 4394 Query 35243 AAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGAC 35302 | |||||||||||||||| | || ||||| ||||| | | |||| ||||| | Sbjct 4393 GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTTGGTTTGTTAAGGGCGATACAAAT 4334 Query 35303 GCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTT 35362 ||||| | || ||| | || ||||| || ||| ||| ||||| || | | || Sbjct 4333 GCCAAGAACTTAGCCGACAAAAAGATCAGAATTTGGGACGGTAATGCCTCAAGATAGTTC 4274 Query 35363 TTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTC 35422 | ||| || || || | ||||||| |||| | ||| | || || || || || ||| Sbjct 4273 CTTGACTCTATCGGCTTGAAAGATAGAGAAGAGTGGGATCTCGGGCCAGTCTATGGGTTC 4214 Query 35423 CAATGGCGTCATTTTGGTGCTGAATATGATAC-CTGTTCTTCCGATTATACTGGAAAGGG 35481 ||||| | || ||||| |||| ||||| || || | |||||| || ||||| || Sbjct 4213 TAATGGAGACACTTTGGAGCTGCTTATGAAACAATGCAC-GACGATTACACAGGAAAAGG 4155 Query 35482 TATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGA 35540 |||| ||||||| | | | || ||| |||| |||||| ||||| | Sbjct 4154 ATTTGACTAATTGGCTGACGTCATTAATCAGTTGA-AGAACAATCCAACAAGCAGAAGAA 4096 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | | |||| || ||||| || |||||| | |||||||||||||| ||||||| Sbjct 4095 TTGTGATGAGTGCTTGGAACGCTGCTGATCTTAAAAACATGGCTCTTCCTCCCTGCCACA 4036 Query 35601 TGACTGCTCAATTTTATGT---GGCTAATGGAGAATTGTCGTGCCAGTTGTATCA 35652 | ||| |||||||||| ||| ||||| | | || ||||| ||||||| Sbjct 4035 TTTTAGCTTAATTTTATGTTTCTGCTGATGGAAAGCTTTCCTGCCAAATGTATCA 3981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989257894962600