Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1748 192 7e-44 seq17288 167 3e-36 >seq1748 Length=94692 Score = 192 bits (212), Expect = 7e-44 Identities = 734/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Minus Query 62763 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62821 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 40401 Query 62822 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62881 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 40400 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 40341 Query 62882 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62935 ||| ||| | | | || | ||||| || | | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT---TTCGTA 63172 ||||| || |||||| | || ||| | || | | ||| || Sbjct 40100 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 63173 -TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCAT 63231 | || | || | | || ||||| || ||||| | | | || || ||||||| Sbjct 40043 CTCGA-TGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCAT 39985 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGA 63290 |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 39984 TTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGA 39926 Query 63291 ATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 |||||||||| || ||| || ||||| | ||||| || || || || ||||||| | Sbjct 39925 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 39867 Query 63350 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 || | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 39866 GAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 39808 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | | ||| || || | ||| | |||||| ||||||| ||| |||| | |||| Sbjct 39807 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 39748 Query 63469 TTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 ||||||| | || |||| |||| || || ||||| ||| ||| || || | Sbjct 39747 TTGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 39689 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 39688 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 39629 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTAG 63645 || || ||| | || || || ||| || || | ||| || ||| || ||| || Sbjct 39628 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 39574 Query 63646 A---CATTT--GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | ||| | ||| | || ||||| | ||||| | || |||| || || ||||| Sbjct 39573 AACTCATCTAAGGTTTTG-GT-GTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 39516 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 39515 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 39456 Query 63761 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || |||| || | ||| | ||||||||| ||||| |||| |||| |||| || Sbjct 39455 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 39399 Query 63819 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 39398 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 167 bits (184), Expect = 3e-36 Identities = 391/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| |||||||| || || || ||| ||||| || |||||||| || || | || Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGC 116848 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33775 ||| || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 116847 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 116788 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 33834 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 116787 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 116729 Query 33835 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33894 | | || | | || ||||| | | || | || || |||||||| | Sbjct 116728 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 116669 Query 33895 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 33954 | || ||| || || || |||||||| | || || | || || | ||| ||||| | Sbjct 116668 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 116609 Query 33955 ATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACAT 34014 ||| | || | || || || || ||||| || ||| || ||||| || | || | Sbjct 116608 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 116549 Query 34015 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 34073 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 116548 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 34132 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 34133 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629615113641600