Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1748 262 4e-65 >seq1748 Length=94692 Score = 262 bits (290), Expect = 4e-65 Identities = 989/1527 (65%), Gaps = 51/1527 (3%) Strand=Plus/Minus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||| |||||||||||||||||||| |||| |||||||||||| | || ||| Sbjct 40831 AACTCACCAGCTAATACTCTTCTTGTATATACATTGGAAGTATATGGTTCGAAGGTCTCG 40772 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | || | |||||| || ||||| ||||| || || | ||||| |||| Sbjct 40771 TTGTTTCCAAGGATCTAAGATGTCGAGGCAGTTGGCATAGGAGCAAGGAGAAGTGAATTT 40712 Query 37264 CTCAATCCATGTGTATTAATTC---TCTTTTTT-AGTTCATTCCAATCCCATAAATCTGT 37319 || ||| ||||||| | |||||| | | || | ||| || || ||| | Sbjct 40711 CTAGCTCC----GTATTAAATGACGTCTTTTCTCAATTGCTCCCAGTCGTATCTATCAGA 40656 Query 37320 T---GGGTTCTTTAACCACATATCATATTGTAGAATA--CCTTTACTCGCTGGAGAATCG 37374 || ||||| ||| | |||| ||| |||||| |||||| ||| || | Sbjct 40655 GCAAGGTTTCTTATTCCATAAATCAAATT--AGAATAGACCTTTAGAGAGTGGGGATCCT 40598 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGG 37432 | | || ||||| || || | | || ||| | | | | | || ||| | |||| Sbjct 40597 GGAAAAGTTTCATAGGGACCCTCGACCTTGGCT--TACTCCATTGAAGCTTCCATGGCGG 40540 Query 37433 CATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG 37492 ||| ||| || || |||||||| || || || | |||| || ||||||| Sbjct 40539 CATGATAGATAGTCTCGAAAATGAGTTCGTTCAACCTGAGAGCTTTTTGATCCTCGAATG 40480 Query 37493 CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 ||| | | || |||| || || || | ||||| || || || ||||| | Sbjct 40479 GGATCTTCAACATTTAAAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGT 40420 Query 37553 GTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTT 37609 || | ||| || ||||| ||| || ||||| |||||| ||||||| |||| Sbjct 40419 GTCTAAGATTTGAATTTCTAGC---TTCAGGAACAGGATAGTAATTGTTATCTATAATTT 40363 Query 37610 TATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAACTTGTCGAA--CATAAA-- 37664 |||||||||| ||| | | | || || | || | | ||||| || | |||| Sbjct 40362 TATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGT-AACTTCTCATAATCATATTCT 40304 Query 37665 TACGTTATTATTAACA--AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACT 37722 || ||| |||||| ||| || | || | |||||| |||||||||| ||||| ||| Sbjct 40303 TAGGTTTCCTTTAACACGAATCTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACT 40244 Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT---AATTGTT 37779 |||||| | |||||| | ||||| || || || ||| || || |||||| Sbjct 40243 TCATCTGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTA---GAACTCTTAATTGTG 40187 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || | ||| | ||||||||| |||| |||| |||||| || || ||||| || || Sbjct 40186 CCAAGATTTTACTAGTTGGATTTTCTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTA 40127 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCT 37899 || || |||||| ||| || || | ||| | | ||| || ||||| || Sbjct 40126 CCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTTAACAGTCTTG 40067 Query 37900 TTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA 37959 | | | | ||||| || || || || | ||| | ||| || | |||||| | Sbjct 40066 CGACCTCTACCAGTGGTTTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTA 40007 Query 37960 -TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTAC 38018 | | | | |||||| ||||| ||||||||| |||| ||| ||||||| | ||| || Sbjct 40006 GTAGTA-AGTCCTGGGCATTCATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAAC 39948 Query 38019 GCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTCTATATT 38077 | | ||| || | ||| || ||| | || ||| | || ||| | | ||||| | Sbjct 39947 TCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC-GTAGAAAAGGTCTCTAGCTCTATTCT 39889 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 |||| || || ||||||||| | || || ||| | ||||||||||||||||||| Sbjct 39888 CTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTT 39829 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | ||| | | | ||||| |||||| |||| || | || | ||||| | | Sbjct 39828 CAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGG 39769 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC--CGGA 38255 ||| ||| | | ||||||| || | | ||||| || | |||||| ||| | || Sbjct 39768 TGTCATTGAAAACCTTTAACATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGA 39709 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 | || ||| | ||||| || || | || | ||| || ||||| ||| || Sbjct 39708 TGTAGGAGT--CAGCAGCTCTTACATCGGACACTGAGACTCCGATACCACCAGCAGCCTT 39651 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 ||| || | ||| || |||||| || ||||| ||||| || || ||| || |||| Sbjct 39650 TGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATACCATCAATGGAGTCTTCTTTTAC 39591 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 | ||| | || ||| | ||| | ||| ||| ||||| | |||||| | || || Sbjct 39590 AGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTTGGTGTTCCAGAGTTAAACAGAGTTGG 39531 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAAT--AATTATATGTTTCTATTACATCATCT 38493 || ||||| | ||||| || ||| || ||| || || || | | || Sbjct 39530 AGTGGCATGAGTAAACCACAGTT--GACTCATCAAATCGTAAGTCTCGAACGCTGACTCA 39473 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 | || | |||||||| | | ||| ||||| ||||| || |||||||| || | Sbjct 39472 AGGTCTTCTTTATGAATACCAATACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGG 39413 Query 38554 ATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTA 38613 |||| || | |||||| || || | | |||| |||||| | | |||||||| | Sbjct 39412 ATTTGGTTGCCATCTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGTCA 39353 Query 38614 TATGAATAATCTCTATCGTATGCTATT 38640 || || |||||||| || ||||| Sbjct 39352 TAGTTGTAGTCTCTATCATAGACTATT 39326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468374169276800