Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1748 178 2e-39 seq17288 140 4e-28 >seq1748 Length=94692 Score = 178 bits (196), Expect = 2e-39 Identities = 730/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Minus Query 65556 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 65614 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 40401 Query 65615 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 65674 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 40400 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 40341 Query 65675 TTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------CGCTCATCTATTACAAACAT 65728 ||| ||| | | | || | ||||| || || | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG-TATCTCT--TTTCTCTTTCGTA 65965 ||||| || ||||| | | || ||| | |||| |||| || Sbjct 40100 TTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 65966 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 | | |||| | || || ||||| || ||||| | | | ||| || |||||| Sbjct 40043 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 39986 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGG 66082 | |||||||| | | ||| ||| | | | |||| |||| | |||| || ||||| || Sbjct 39985 TTTGGACACATGAGAGTCCAATCTTCAT-TTGCTTCAACTCTTCTCATGAAAAGATCTGG 39927 Query 66083 AATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141 | |||||||||| || ||| | ||||| | ||||| || || || || ||||||| Sbjct 39926 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 39868 Query 66142 TAAGATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACT 66200 | || | ||||| | | || |||||| ||||| ||||| | || | || | | || Sbjct 39867 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 39809 Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 39808 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 39749 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 |||||||| | ||||| || || || || || ||| ||| || || | Sbjct 39748 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 39689 Query 66321 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 39688 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 39629 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAG 66438 || || ||| | || || || || || || | ||| || ||| || ||| || Sbjct 39628 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 39574 Query 66439 A---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 | ||| | ||| | ||||| | ||||| | || |||| || || ||||| Sbjct 39573 AACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 39516 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 39515 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 39456 Query 66554 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 39455 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 39399 Query 66612 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 39398 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 140 bits (154), Expect = 4e-28 Identities = 382/577 (66%), Gaps = 6/577 (1%) Strand=Plus/Minus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 116849 Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 36350 | || || ||||| |||||||| | | | || || ||| |||||||| |||| Sbjct 116848 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 116789 Query 36351 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 36410 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 116788 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 116729 Query 36411 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 36470 | | || | | || || || | | || | || || |||||||| | Sbjct 116728 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 116669 Query 36471 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 36530 | || |||||| || || |||||||| | || || | || || | ||| ||||| | Sbjct 116668 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 116609 Query 36531 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 36590 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 116608 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 116549 Query 36591 GTTTTATAAAATATTTTTCGTT-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 36649 | || ||||| | | | ||||| | || | ||| | | |||||| || | || | | Sbjct 116548 GCTTGATAAAGTGTCTCTCGTTGTCGT-TGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 36708 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 36709 GTCATGATATTGAATTGGAAAAATAACAAATCTATTT 36745 ||| | || | ||||||| ||||||||||| ||| Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTT 116394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657961197444800