Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10467 89.7 5e-13 seq6376 89.7 5e-13 seq5238 89.7 5e-13 seq1293 89.7 5e-13 seq20086 87.8 2e-12 >seq10467 Length=17661 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||| | || || |||||||| ||||| ||||| || || || |||| Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 3763 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 3762 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC- 3704 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | ||||| || |||| || | || Sbjct 3703 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 3644 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||| || || ||||| || | ||| Sbjct 3643 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 3611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||| | || || |||||||| ||||| ||||| || || || |||| Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 13891 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 13892 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC- 13950 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | ||||| || |||| || | || Sbjct 13951 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 14010 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||| || || ||||| || | ||| Sbjct 14011 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 14043 >seq6376 Length=13110 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||| | || || |||||||| ||||| ||||| || || || |||| Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 12161 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 12160 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC- 12102 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | ||||| || |||| || | || Sbjct 12101 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 12042 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||| || || ||||| || | ||| Sbjct 12041 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 12009 >seq5238 Length=45295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||| | || || |||||||| ||||| ||||| || || || |||| Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 21972 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 21971 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC- 21913 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | ||||| || |||| || | || Sbjct 21912 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 21853 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||| || || ||||| || | ||| Sbjct 21852 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 21820 >seq1293 Length=7053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||| | || || |||||||| ||||| ||||| || || || |||| Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 6450 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 6449 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC- 6391 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | ||||| || |||| || | || Sbjct 6390 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 6331 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||| || || ||||| || | ||| Sbjct 6330 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 6298 >seq20086 Length=32257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || |||||||| ||||| ||||| || || || |||||| Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || |||||| |||| || | || ||||| || || || ||||||||||| || Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC-TTG 22062 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | ||||| || |||| || | ||||| Sbjct 22061 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 22002 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || ||||| || | ||| Sbjct 22001 ACCGGTCAAAGTCTTGACGAAGATCTACAT 21972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495904515424000