Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1748 214 3e-50 seq17288 172 8e-38 >seq1748 Length=94692 Score = 214 bits (236), Expect = 3e-50 Identities = 732/1120 (65%), Gaps = 36/1120 (3%) Strand=Plus/Minus Query 79435 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA 79494 || ||||| ||||||| |||||||| || || ||||| ||||| ||| ||| || | Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 40400 Query 79495 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACT 79554 ||||| |||| |||||| ||||| |||||||||||||||| |||||| | | || | || Sbjct 40399 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTT-AGTAATTCT 40341 Query 79555 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC------CATCTATTACAAACAT 79607 ||| ||| | | || || | ||||| || | | | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667 || || || | ||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 || |||||||| |||||| || |||||| || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 79788 CGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTC--TTTCGTA 79844 ||||| || |||||| | || |||| | |||| |||| || Sbjct 40100 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAATCCAGGACATTCGT 79903 | | || | | || ||||| || ||||| | | || | ||| || ||||| | Sbjct 40043 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTA-AGTCCTGGGCATTCAT 39985 Query 79904 CAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAA 79963 |||||||| | | ||| ||| ||| | | |||| | |||| || ||||| ||| Sbjct 39984 TTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAG 39925 Query 79964 TCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| | Sbjct 39924 TCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTG 39866 Query 80023 AGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 || | ||||| | | || ||||||| ||||| ||||| | || | || | | |||| Sbjct 39865 AGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 39807 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 80141 | || ||| || || | ||| | |||||| ||||||| ||| |||| | ||||| Sbjct 39806 CTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACAT 39747 Query 80142 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 80201 |||||| | ||||| || || || || || ||| ||| || || | | Sbjct 39746 TGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTAC 39687 Query 80202 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261 || | ||| | || || || || || || ||||| | || | |||||| Sbjct 39686 ATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAA 39627 Query 80262 CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA-AG-TAGAAAACAGCTAGA- 80318 || ||| | || || || ||| || || | ||| || ||| || ||| ||| Sbjct 39626 AGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAGAA 39572 Query 80319 --CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 ||| | ||| | ||||| | ||||| | || |||| || || ||||||| Sbjct 39571 CTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACC 39514 Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434 | || | || | || ||| ||||| | ||||| || | || || |||||| | Sbjct 39513 ACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATAC 39454 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | | || | ||| | ||||||||| ||||| |||| ||| ||| | || || | Sbjct 39453 CAATACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGAT-TTGGTTGCCATCTTTA 39395 Query 80495 ACAA-GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 | || ||||| | ||||||| ||| | ||||||||||||| Sbjct 39394 AGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 172 bits (190), Expect = 8e-38 Identities = 392/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||| |||||||| ||| || || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||||| |||||||| || || || ||| || || || || |||||||| || || | | Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 116849 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCC 50152 | || || |||| |||||||| | | || ||||| ||| |||||||| |||| Sbjct 116848 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 116789 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttt 50211 | || |||||||| ||||| || || ||| | ||||| || ||||| | | || Sbjct 116788 ATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTC 116730 Query 50212 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || | || | | || ||||| | | || | || || |||||||| Sbjct 116729 TCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTC 116670 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 || || ||| || || || |||||||| | || || | || || | ||| ||||| Sbjct 116669 TCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAG 116610 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 |||| | || | || || || || |||||||| ||| || ||||| || | || Sbjct 116609 AATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACG 116550 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451 || || ||||| ||| | |||||| | ||| | | |||||| || | || | | Sbjct 116549 TGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 50510 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 50511 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718037876580800