Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1748 221 2e-52 seq17288 149 8e-31 >seq1748 Length=94692 Score = 221 bits (244), Expect = 2e-52 Identities = 501/739 (68%), Gaps = 22/739 (3%) Strand=Plus/Minus Query 71518 GCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA 71577 || ||||| ||||||| || ||||| || || ||||||||||| ||| ||| || | Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 40400 Query 71578 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACT 71637 ||||| |||| |||||| ||||| |||||||||||||||| ||||| || | || | || Sbjct 40399 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 40341 Query 71638 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACA--AACACG--- 71691 ||| ||| | | || || | ||||| || || | | || | |||||| Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATAT-TCTTAGGT-TTCCTTTAACACGAAT 40283 Query 71692 ---TTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGT 71748 || || |||| ||| || |||||||| || || || |||| | | || | ||| Sbjct 40282 CTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCG 40223 Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 | || ||||||||||| ||| || ||| || || || | ||||| | || ||| Sbjct 40222 ACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTT 40163 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 | || || ||||| || ||||| ||| | ||||||||||| || | ||||| ||||| Sbjct 40162 CTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATG 40103 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTTTTCTC--TTTCG 71925 || ||||| || |||||| | | ||||| | |||| |||| Sbjct 40102 ATTTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCA 40046 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCA 71985 || | | || | | || ||||| || ||||| | | | | ||| || |||||| Sbjct 40045 TACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 39986 Query 71986 TTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGA 72045 || |||||||| | | ||| ||| ||| | | |||| | |||| || ||||| ||| Sbjct 39985 TTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGA 39926 Query 72046 ATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 72104 |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| | Sbjct 39925 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 39867 Query 72105 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 || | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 39866 GAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 39808 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 || | ||| || || | ||| | |||||| ||||||| ||| |||| | |||| Sbjct 39807 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 39748 Query 72224 TTGGAATAATACCATTGGA 72242 ||||||| | ||||| || Sbjct 39747 TTGGAATCAATCCATTTGA 39729 >seq17288 Length=143976 Score = 149 bits (164), Expect = 8e-31 Identities = 389/583 (67%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| ||| || ||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||||| |||||||| || || || ||| || ||||| || |||||||| || || | | Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 116849 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 42257 | || || ||||| |||||||| | | | || || ||| |||||||| |||| Sbjct 116848 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 116789 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttt 42316 | || |||||||| ||||| || || ||| | ||||| || ||||| | | || Sbjct 116788 ATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTC 116730 Query 42317 tCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || | || | | || ||||| | | || | ||||| |||||||| Sbjct 116729 TCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTC 116670 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 || || ||| || || || |||||||| | || || | ||| || | ||| ||||| Sbjct 116669 TCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAG 116610 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 |||| | || | || ||||| || |||||||| ||| || ||||| || | || Sbjct 116609 AATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACG 116550 Query 42497 TGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATCTTTAGA 42555 || || ||||| | | | |||| | ||| | | | | |||||| || | || | | Sbjct 116549 TGCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGC 116491 Query 42556 TATATCTACTTCTTCTACCGTCCA-AAATGATGCTTCTGCCTTTTTATACATATTCCAGA 42614 | || | ||| || ||||| ||| | | |||| | || ||||| ||||||| Sbjct 116490 GAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGA 116432 Query 42615 TATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 | || | || | ||||| | ||||||||||| ||||| || Sbjct 116431 TGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670923428747200