Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17288 122 1e-22 >seq17288 Length=143976 Score = 122 bits (134), Expect = 1e-22 Identities = 386/584 (66%), Gaps = 26/584 (4%) Strand=Plus/Plus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG--GCCTCCTTT-T 125055 |||| |||| ||| | ||||| ||| | |||||||| || ||| | || |||| | Sbjct 116411 TTCCAATCAAGTACAACGACATCTGGAAGATGTACAA---GGACCAGATGGCTGCTTTCT 116467 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| || || |||| || ||| ||| | | |||||||||| | | | | Sbjct 116468 GGACCTCTGAGGAAATCGACCTCGCCACCGACGTTAAGGATTGGGAGAGAC---TCAACG 116524 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | | ||| || | ||||| |||| | | ||||| || || | ||| || ||||||| Sbjct 116525 ACAACGAGAGACACTTTATCAAGCACGTCCTTGCCTTTTTCGCTGCCTCAGACGGAATCG 116584 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT 125232 ||||||| || || | | | |||||| | || | ||| ||||||| | | Sbjct 116585 TCAACGAGAACCTCGCCCAGA-GATTCTGTACTGAAAT--CCAAGTTCCAGAAGCACGCT 116641 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || |||||||| ||||| |||||| | ||||| || | ||||| ||| | Sbjct 116642 GTTTCTATGGCTTCCAAATGATGATGGAGAACATTCACTCAGAGACTTACTCAGTACTCA 116701 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | |||| ||| | || || || || | | ||||| || || ||| | Sbjct 116702 TCGACACCCTCATCAGTGACCCACACGAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA 116761 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA---CAAGT 125409 | || | || ||| |||||| |||||| ||| |||||| | ||| || | || Sbjct 116762 TCCCAGTTGTAACTAAGAAGGCTGAATGGGCCATTAAGTGGATTGGTGA-GAGCGCTAG- 116819 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||||| | || ||||| | || ||||| || | |||||||||||||| || || | Sbjct 116820 CTTCG----CTGAGAGACTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGAT 116875 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || ||| | ||||| ||||| |||||||| || |||||||| || || || | Sbjct 116876 CCTTCTGC-TCAATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCA 116934 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || ||| | || || ||||||| || | ||| ||||||||| Sbjct 116935 AATGAGCTCATTTCAAGAGACGAAGGTATGCACACTGACTTTGC 116978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740820949467200