Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18779 122 6e-23 seq10467 93.3 3e-14 seq6376 93.3 3e-14 seq5238 93.3 3e-14 seq1293 93.3 3e-14 seq20086 91.5 1e-13 seq2143 84.2 2e-11 >seq18779 Length=42783 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 13138 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 13079 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| || ||||| | || | | |||||| ||| ||| Sbjct 13078 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 13019 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || |||||||| | || || Sbjct 13018 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 12960 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || || || || || || || ||||||||| Sbjct 12959 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 12911 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 12910 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 12851 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| || ||||| | || | | |||||| ||| ||| Sbjct 12850 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 12791 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| ||| || |||| || || || || ||| Sbjct 12790 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACA 12731 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || || || || || || || ||||||||| Sbjct 12730 TCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATA 12683 >seq10467 Length=17661 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || |||||||| ||||||||||| | |||| ||||| Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 3763 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || | || ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 3762 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 3703 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || |||| |||||||| | |||||||| | ||||| || Sbjct 3702 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 3643 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| ||| || || || || | ||| ||| Sbjct 3642 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 3607 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || |||||||| ||||||||||| | |||| ||||| Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 13891 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || | || ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 13892 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 13951 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || |||| |||||||| | |||||||| | ||||| || Sbjct 13952 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 14011 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| ||| || || || || | ||| ||| Sbjct 14012 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 14047 >seq6376 Length=13110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || |||||||| ||||||||||| | |||| ||||| Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 12161 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || | || ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 12160 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 12101 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || |||| |||||||| | |||||||| | ||||| || Sbjct 12100 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 12041 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| ||| || || || || | ||| ||| Sbjct 12040 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 12005 >seq5238 Length=45295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || |||||||| ||||||||||| | |||| ||||| Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 21972 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || | || ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 21971 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 21912 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || |||| |||||||| | |||||||| | ||||| || Sbjct 21911 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 21852 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| ||| || || || || | ||| ||| Sbjct 21851 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21816 >seq1293 Length=7053 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || |||||||| ||||||||||| | |||| ||||| Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 6450 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || | || ||||| | || | | ||||| || ||||| ||||||||||| Sbjct 6449 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 6390 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || |||| |||||||| | |||||||| | ||||| || Sbjct 6389 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 6330 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| ||| || || || || | ||| ||| Sbjct 6329 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 6294 >seq20086 Length=32257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || |||||||| ||||||||||| | |||| ||||||| Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || | || ||||| | || | | ||||| || ||||| ||||||||||| | Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 22061 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || |||| |||||||| | |||||||| | ||||| || ||| Sbjct 22060 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 22001 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || |||| ||| || || || || | ||| ||| Sbjct 22000 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21968 >seq2143 Length=26640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 6012 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 6071 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| || ||||| | || | | |||||| ||| ||| Sbjct 6072 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 6131 Query 15257 ATTCCTTCTTTGTC 15270 || ||||| || || Sbjct 6132 ATACCTTCCTTATC 6145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362065670402520