Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20086 158 3e-33 seq10467 158 3e-33 seq6376 158 3e-33 seq5238 158 3e-33 seq1293 158 3e-33 seq18779 131 4e-25 seq17194 114 3e-20 seq19439 95.1 3e-14 seq19438 95.1 3e-14 seq3158 95.1 3e-14 seq2143 95.1 3e-14 >seq20086 Length=32257 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 22168 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 22109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 22108 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 22049 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 22048 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21989 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 21988 TTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 3807 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 3748 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 3747 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 3688 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 3687 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 3628 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 3627 TTGACGAAGATCTACATTTT 3608 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 13847 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 13906 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 13907 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 13966 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 13967 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 14026 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 14027 TTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 12205 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 12146 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 12145 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 12086 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 12085 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 12026 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 12025 TTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 22016 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 21957 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 21956 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 21897 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 21896 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21837 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 21836 TTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 6494 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 6435 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 6434 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 6375 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 6374 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 6315 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 6314 TTGACGAAGATCTACATTTT 6295 >seq18779 Length=42783 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 13141 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 13082 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 13081 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGT 13022 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || |||||||| || ||||| || | |||||| ||| || Sbjct 13021 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 12962 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || ||||| || || || || || ||||| Sbjct 12961 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 12913 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 12854 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 12853 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 12794 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || Sbjct 12793 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCA 12734 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || || ||||| Sbjct 12733 ACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 >seq17194 Length=120762 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || || || ||||| || || ||||| Sbjct 44559 ATACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCG 44618 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| | ||||||||||| ||||| || ||||||||||| || Sbjct 44619 GAGAGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGT 44678 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||| ||||| || || ||||| || || |||||||| Sbjct 44679 GGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTC 44719 >seq19439 Length=65028 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| ||||| |||| ||| ||||||||||| || |||||||| || ||| Sbjct 3685 TCCACCTCTTAGTCTAAGAACTACATGCAATGTAGATTCCTTTTGAATATTGTAATCACT 3626 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 |||||| |||| | ||||| || ||||||||||| || | |||| Sbjct 3625 TAGAGTCTTACCTTTTTCTAATTACTTTCCAGCAAATATCAATCTCT 3579 >seq19438 Length=20695 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| ||||| |||| ||| ||||||||||| || |||||||| || ||| Sbjct 13538 TCCACCTCTTAGTCTAAGAACTACATGCAATGTAGATTCCTTTTGAATATTGTAATCACT 13479 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 |||||| |||| | ||||| || ||||||||||| || | |||| Sbjct 13478 TAGAGTCTTACCTTTTTCTAATTACTTTCCAGCAAATATCAATCTCT 13432 >seq3158 Length=18878 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| ||||| |||| ||| ||||||||||| || |||||||| || ||| Sbjct 11596 TCCACCTCTTAGTCTAAGAACTACATGCAATGTAGATTCCTTTTGAATATTGTAATCACT 11537 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 |||||| |||| | ||||| || ||||||||||| || | |||| Sbjct 11536 TAGAGTCTTACCTTTTTCTAATTACTTTCCAGCAAATATCAATCTCT 11490 >seq2143 Length=26640 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 6009 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 6068 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 6069 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 6128 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || ||||| ||||| || ||||| || || Sbjct 6129 GGAATACCTTCCTTATCTTGGATCTTGGCCTT 6160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151018971049760