Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1748 196 6e-45 seq17288 176 6e-39 >seq1748 Length=94692 Score = 196 bits (216), Expect = 6e-45 Identities = 735/1125 (65%), Gaps = 46/1125 (4%) Strand=Plus/Minus Query 62712 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62770 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 40401 Query 62771 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62830 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 40400 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 40341 Query 62831 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62884 ||| ||| | | | || | ||||| || | | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT---TTCGTA 63121 ||||| || |||||| | || ||| | || | | ||| || Sbjct 40100 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 63122 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 63179 | | |||| | || || ||||| || ||||| | | | ||| || |||||| Sbjct 40043 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 39986 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGG 63238 | |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| || Sbjct 39985 TTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGG 39927 Query 63239 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63297 | |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 39926 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 39868 Query 63298 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 | || | ||||| | | || ||||||| ||||| ||||| | || | || | | || Sbjct 39867 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 39809 Query 63357 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 39808 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 39749 Query 63417 ATTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475 |||||||| | || |||| |||| || || ||||| ||| ||| || || | Sbjct 39748 ATTGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCT 39690 Query 63476 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 | || | ||| | || || || || || || ||||| | || | ||| Sbjct 39689 TACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTT 39630 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTA 63593 ||| || ||| | ||||| || ||| || || | ||| || ||| || ||| | Sbjct 39629 TAAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAA 39575 Query 63594 GA---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 || ||| | ||| | ||||| | ||||| | || |||| || || |||| Sbjct 39574 GAACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAA 39517 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 |||| || | | | || ||| ||||| | ||||| || | || || ||||| Sbjct 39516 ACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAA 39457 Query 63709 TTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 | || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 39456 TACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCAT 39400 Query 63767 TTTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 39399 CTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 176 bits (194), Expect = 6e-39 Identities = 393/582 (68%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| ||| |||||||| ||| || || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| |||||||| || || || ||| ||||| || |||||||| || || | || Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGC 116848 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33497 ||| || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 116847 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 116788 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 33556 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 116787 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 116729 Query 33557 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33616 | | || | | || ||||| | | || | || || |||||||| | Sbjct 116728 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 116669 Query 33617 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33676 | || ||| || || || |||||||| | || || | || || | ||| ||||| | Sbjct 116668 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 116609 Query 33677 ATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33736 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 116608 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 116549 Query 33737 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 33795 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 116548 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 33796 ATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATGTTCCAGAT 33854 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 33855 GTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| | || | |||||| | ||||||||||| ||||| || Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622746922475200